Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC8.38□□□□□ -1.07
USH2AO75445 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC8.38□□□□□ -1.07
USH2AO75445 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
USH2AO75445 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC8.38□□□□□ -1.07
USH2AO75445 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC8.38□□□□□ -1.07
USH2AO75445 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
USH2AO75445 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
USH2AO75445 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC8.37□□□□□ -1.07
USH2AO75445 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC8.37□□□□□ -1.07
USH2AO75445 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC8.37□□□□□ -1.07
USH2AO75445 Z92544.3-201ENST00000624747 417 ntBASIC8.37□□□□□ -1.07
USH2AO75445 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
USH2AO75445 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC8.37□□□□□ -1.07
USH2AO75445 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
USH2AO75445 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC8.37□□□□□ -1.07
USH2AO75445 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC8.37□□□□□ -1.07
USH2AO75445 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
USH2AO75445 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC8.37□□□□□ -1.07
USH2AO75445 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
USH2AO75445 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC8.37□□□□□ -1.07
USH2AO75445 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC8.37□□□□□ -1.07
USH2AO75445 SIGLEC30P-201ENST00000455569 941 ntBASIC8.37□□□□□ -1.07
USH2AO75445 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC8.37□□□□□ -1.07
USH2AO75445 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC8.37□□□□□ -1.07
USH2AO75445 MTDHP5-201ENST00000598980 586 ntBASIC8.37□□□□□ -1.07
USH2AO75445 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
USH2AO75445 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC8.37□□□□□ -1.07
USH2AO75445 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
USH2AO75445 FBXW4P1-201ENST00000426721 2239 ntBASIC8.37□□□□□ -1.07
USH2AO75445 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC8.37□□□□□ -1.07
USH2AO75445 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
USH2AO75445 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC8.37□□□□□ -1.07
USH2AO75445 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
USH2AO75445 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
USH2AO75445 RBSN-204ENST00000449050 903 ntTSL 2 BASIC8.37□□□□□ -1.07
USH2AO75445 RN7SL606P-201ENST00000472779 293 ntBASIC8.37□□□□□ -1.07
USH2AO75445 NME1-207ENST00000480143 964 ntTSL 2 BASIC8.37□□□□□ -1.07
USH2AO75445 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC8.37□□□□□ -1.07
USH2AO75445 AC027612.4-201ENST00000605371 583 ntBASIC8.37□□□□□ -1.07
USH2AO75445 AL008721.1-201ENST00000609964 604 ntBASIC8.37□□□□□ -1.07
USH2AO75445 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
USH2AO75445 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
USH2AO75445 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC8.37□□□□□ -1.07
USH2AO75445 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC8.37□□□□□ -1.07
USH2AO75445 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
USH2AO75445 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC8.37□□□□□ -1.07
USH2AO75445 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC8.37□□□□□ -1.07
USH2AO75445 CENPM-204ENST00000402420 688 ntTSL 5 BASIC8.37□□□□□ -1.07
USH2AO75445 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC8.37□□□□□ -1.07
USH2AO75445 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC8.37□□□□□ -1.07
USH2AO75445 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC8.37□□□□□ -1.07
USH2AO75445 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC8.37□□□□□ -1.07
USH2AO75445 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC8.37□□□□□ -1.07
USH2AO75445 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
USH2AO75445 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
USH2AO75445 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC8.37□□□□□ -1.07
USH2AO75445 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC8.37□□□□□ -1.07
USH2AO75445 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC8.37□□□□□ -1.07
USH2AO75445 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC8.37□□□□□ -1.07
USH2AO75445 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC8.36□□□□□ -1.07
USH2AO75445 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC8.36□□□□□ -1.07
USH2AO75445 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC8.36□□□□□ -1.07
USH2AO75445 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
USH2AO75445 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
USH2AO75445 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
USH2AO75445 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC8.36□□□□□ -1.07
USH2AO75445 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC8.36□□□□□ -1.07
USH2AO75445 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC8.36□□□□□ -1.07
USH2AO75445 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC8.36□□□□□ -1.07
USH2AO75445 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC8.36□□□□□ -1.07
USH2AO75445 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
USH2AO75445 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
USH2AO75445 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC8.36□□□□□ -1.07
USH2AO75445 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC8.36□□□□□ -1.07
USH2AO75445 AC005225.4-201ENST00000557330 545 ntBASIC8.36□□□□□ -1.07
USH2AO75445 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
USH2AO75445 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC8.36□□□□□ -1.07
USH2AO75445 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC8.36□□□□□ -1.07
USH2AO75445 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
USH2AO75445 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
USH2AO75445 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC8.36□□□□□ -1.07
USH2AO75445 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
USH2AO75445 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC8.36□□□□□ -1.07
USH2AO75445 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
USH2AO75445 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
USH2AO75445 AL031432.2-201ENST00000566714 459 ntBASIC8.36□□□□□ -1.07
USH2AO75445 AL928711.1-201ENST00000570165 459 ntBASIC8.36□□□□□ -1.07
USH2AO75445 GZMM-202ENST00000592501 941 ntTSL 3 BASIC8.36□□□□□ -1.07
USH2AO75445 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC8.36□□□□□ -1.07
USH2AO75445 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC8.36□□□□□ -1.07
USH2AO75445 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
USH2AO75445 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC8.36□□□□□ -1.07
USH2AO75445 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
USH2AO75445 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC8.36□□□□□ -1.07
USH2AO75445 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
USH2AO75445 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
USH2AO75445 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
USH2AO75445 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC8.36□□□□□ -1.07
USH2AO75445 AC244015.2-201ENST00000616358 1861 ntBASIC8.36□□□□□ -1.07
USH2AO75445 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms