Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
RNF40O75150 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC20.26■□□□□ 0.83
RNF40O75150 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC20.26■□□□□ 0.83
RNF40O75150 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RNF40O75150 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RNF40O75150 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC20.25■□□□□ 0.83
RNF40O75150 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
RNF40O75150 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC20.25■□□□□ 0.83
RNF40O75150 GOLGA2P11-201ENST00000562660 1621 ntBASIC20.25■□□□□ 0.83
RNF40O75150 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RNF40O75150 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
RNF40O75150 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
RNF40O75150 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RNF40O75150 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RNF40O75150 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
RNF40O75150 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
RNF40O75150 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC20.25■□□□□ 0.83
RNF40O75150 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
RNF40O75150 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC20.25■□□□□ 0.83
RNF40O75150 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
RNF40O75150 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RNF40O75150 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC20.25■□□□□ 0.83
RNF40O75150 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RNF40O75150 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
RNF40O75150 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RNF40O75150 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
RNF40O75150 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RNF40O75150 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
RNF40O75150 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RNF40O75150 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
RNF40O75150 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RNF40O75150 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
RNF40O75150 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RNF40O75150 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RNF40O75150 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RNF40O75150 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC20.24■□□□□ 0.83
RNF40O75150 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC20.24■□□□□ 0.83
RNF40O75150 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC20.24■□□□□ 0.83
RNF40O75150 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC20.24■□□□□ 0.83
RNF40O75150 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC20.24■□□□□ 0.83
RNF40O75150 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC20.24■□□□□ 0.83
RNF40O75150 AL049597.2-201ENST00000565575 961 ntBASIC20.24■□□□□ 0.83
RNF40O75150 P4HB-223ENST00000576390 439 ntTSL 4 BASIC20.24■□□□□ 0.83
RNF40O75150 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RNF40O75150 KRT8P20-201ENST00000423953 1409 ntBASIC20.24■□□□□ 0.83
RNF40O75150 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC20.24■□□□□ 0.83
RNF40O75150 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC20.24■□□□□ 0.83
RNF40O75150 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
RNF40O75150 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
RNF40O75150 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RNF40O75150 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
RNF40O75150 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RNF40O75150 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
RNF40O75150 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC20.24■□□□□ 0.83
RNF40O75150 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
RNF40O75150 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC20.23■□□□□ 0.83
RNF40O75150 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC20.23■□□□□ 0.83
RNF40O75150 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC20.23■□□□□ 0.83
RNF40O75150 ARMC10P1-201ENST00000313754 855 ntBASIC20.23■□□□□ 0.83
RNF40O75150 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
RNF40O75150 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC20.23■□□□□ 0.83
RNF40O75150 AC005521.1-201ENST00000393351 872 ntBASIC20.23■□□□□ 0.83
RNF40O75150 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC20.23■□□□□ 0.83
RNF40O75150 AL354751.1-201ENST00000412768 1863 ntBASIC20.23■□□□□ 0.83
RNF40O75150 NIFKP9-201ENST00000419265 221 ntBASIC20.23■□□□□ 0.83
RNF40O75150 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC20.23■□□□□ 0.83
RNF40O75150 AL390955.1-201ENST00000428694 934 ntBASIC20.23■□□□□ 0.83
RNF40O75150 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC20.23■□□□□ 0.83
RNF40O75150 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC20.23■□□□□ 0.83
RNF40O75150 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
RNF40O75150 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
RNF40O75150 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC20.23■□□□□ 0.83
RNF40O75150 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC20.23■□□□□ 0.83
RNF40O75150 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC20.23■□□□□ 0.83
RNF40O75150 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
RNF40O75150 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
RNF40O75150 AC006333.2-201ENST00000607957 2099 ntBASIC20.23■□□□□ 0.83
RNF40O75150 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC20.23■□□□□ 0.83
RNF40O75150 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RNF40O75150 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RNF40O75150 LINC01568-207ENST00000641790 1380 ntBASIC20.22■□□□□ 0.83
RNF40O75150 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC20.22■□□□□ 0.83
RNF40O75150 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
RNF40O75150 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC20.22■□□□□ 0.83
RNF40O75150 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RNF40O75150 WIZP1-201ENST00000531444 2299 ntBASIC20.22■□□□□ 0.83
RNF40O75150 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.22■□□□□ 0.83
RNF40O75150 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RNF40O75150 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.22■□□□□ 0.83
RNF40O75150 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RNF40O75150 KSR1P1-201ENST00000446298 240 ntBASIC20.22■□□□□ 0.83
RNF40O75150 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.22■□□□□ 0.83
RNF40O75150 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC20.22■□□□□ 0.83
RNF40O75150 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC20.22■□□□□ 0.83
RNF40O75150 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC20.22■□□□□ 0.83
RNF40O75150 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC20.22■□□□□ 0.83
RNF40O75150 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC20.22■□□□□ 0.83
RNF40O75150 NT5C-211ENST00000582170 653 ntTSL 3 BASIC20.22■□□□□ 0.83
RNF40O75150 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC20.22■□□□□ 0.83
RNF40O75150 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms