Protein–RNA interactions for Protein: O14493

CLDN4, Claudin-4, humanhuman

Predictions only

Length 209 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4O14493 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLDN4O14493 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
CLDN4O14493 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.42
CLDN4O14493 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
CLDN4O14493 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
CLDN4O14493 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.42
CLDN4O14493 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLDN4O14493 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLDN4O14493 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC17.7■□□□□ 0.42
CLDN4O14493 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
CLDN4O14493 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC17.7■□□□□ 0.42
CLDN4O14493 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CLDN4O14493 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLDN4O14493 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
CLDN4O14493 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLDN4O14493 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC17.7■□□□□ 0.42
CLDN4O14493 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC17.7■□□□□ 0.42
CLDN4O14493 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
CLDN4O14493 ECEL1P3-201ENST00000427961 737 ntBASIC17.7■□□□□ 0.42
CLDN4O14493 MCCD1P1-208ENST00000445732 328 ntBASIC17.7■□□□□ 0.42
CLDN4O14493 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC17.7■□□□□ 0.42
CLDN4O14493 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC17.7■□□□□ 0.42
CLDN4O14493 AC008622.2-201ENST00000617006 1229 ntBASIC17.7■□□□□ 0.42
CLDN4O14493 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLDN4O14493 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLDN4O14493 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLDN4O14493 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
CLDN4O14493 USP39-202ENST00000409025 1946 ntTSL 5 BASIC17.7■□□□□ 0.42
CLDN4O14493 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC17.7■□□□□ 0.42
CLDN4O14493 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLDN4O14493 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLDN4O14493 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLDN4O14493 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLDN4O14493 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CLDN4O14493 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLDN4O14493 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
CLDN4O14493 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLDN4O14493 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLDN4O14493 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CLDN4O14493 KRT8P32-201ENST00000512863 1461 ntBASIC17.69■□□□□ 0.42
CLDN4O14493 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLDN4O14493 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC17.69■□□□□ 0.42
CLDN4O14493 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CLDN4O14493 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CLDN4O14493 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLDN4O14493 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLDN4O14493 AC090340.1-201ENST00000620778 4980 ntBASIC17.69■□□□□ 0.42
CLDN4O14493 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLDN4O14493 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC17.69■□□□□ 0.42
CLDN4O14493 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
CLDN4O14493 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLDN4O14493 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC17.69■□□□□ 0.42
CLDN4O14493 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLDN4O14493 INGX-201ENST00000359239 846 ntBASIC17.69■□□□□ 0.42
CLDN4O14493 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLDN4O14493 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC17.69■□□□□ 0.42
CLDN4O14493 DUT-205ENST00000558813 769 ntTSL 2 BASIC17.69■□□□□ 0.42
CLDN4O14493 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC17.69■□□□□ 0.42
CLDN4O14493 FAM87A-204ENST00000613235 858 ntBASIC17.69■□□□□ 0.42
CLDN4O14493 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC17.69■□□□□ 0.42
CLDN4O14493 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
CLDN4O14493 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLDN4O14493 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC17.69■□□□□ 0.42
CLDN4O14493 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLDN4O14493 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLDN4O14493 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
CLDN4O14493 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CLDN4O14493 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC17.69■□□□□ 0.42
CLDN4O14493 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLDN4O14493 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC17.68■□□□□ 0.42
CLDN4O14493 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC17.68■□□□□ 0.42
CLDN4O14493 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLDN4O14493 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLDN4O14493 RCC2P3-201ENST00000418112 1537 ntBASIC17.68■□□□□ 0.42
CLDN4O14493 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLDN4O14493 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CLDN4O14493 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CLDN4O14493 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLDN4O14493 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC17.68■□□□□ 0.42
CLDN4O14493 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
CLDN4O14493 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLDN4O14493 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLDN4O14493 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC17.68■□□□□ 0.42
CLDN4O14493 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLDN4O14493 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLDN4O14493 AL023284.2-201ENST00000405850 579 ntBASIC17.68■□□□□ 0.42
CLDN4O14493 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC17.68■□□□□ 0.42
CLDN4O14493 SLC25A3P1-201ENST00000443844 931 ntBASIC17.68■□□□□ 0.42
CLDN4O14493 ATP5G1P1-201ENST00000448724 379 ntBASIC17.68■□□□□ 0.42
CLDN4O14493 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
CLDN4O14493 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC17.68■□□□□ 0.42
CLDN4O14493 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLDN4O14493 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC17.68■□□□□ 0.42
CLDN4O14493 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CLDN4O14493 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC17.68■□□□□ 0.42
CLDN4O14493 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLDN4O14493 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC17.68■□□□□ 0.42
CLDN4O14493 GPAT2P1-201ENST00000444924 1672 ntBASIC17.67■□□□□ 0.42
CLDN4O14493 AL109659.2-201ENST00000606809 1674 ntBASIC17.67■□□□□ 0.42
CLDN4O14493 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms