Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGN4O00479 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGN4O00479 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGN4O00479 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGN4O00479 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HMGN4O00479 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGN4O00479 KRT18P29-201ENST00000397031 1267 ntBASIC17.5■□□□□ 0.39
HMGN4O00479 MESTP1-201ENST00000404287 994 ntBASIC17.5■□□□□ 0.39
HMGN4O00479 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC17.5■□□□□ 0.39
HMGN4O00479 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC17.5■□□□□ 0.39
HMGN4O00479 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC17.5■□□□□ 0.39
HMGN4O00479 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
HMGN4O00479 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HMGN4O00479 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC17.5■□□□□ 0.39
HMGN4O00479 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGN4O00479 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC17.5■□□□□ 0.39
HMGN4O00479 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC17.5■□□□□ 0.39
HMGN4O00479 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC17.5■□□□□ 0.39
HMGN4O00479 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGN4O00479 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HMGN4O00479 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC17.5■□□□□ 0.39
HMGN4O00479 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGN4O00479 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGN4O00479 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
HMGN4O00479 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC17.49■□□□□ 0.39
HMGN4O00479 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
HMGN4O00479 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGN4O00479 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGN4O00479 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
HMGN4O00479 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGN4O00479 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HMGN4O00479 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGN4O00479 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
HMGN4O00479 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC17.49■□□□□ 0.39
HMGN4O00479 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGN4O00479 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGN4O00479 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGN4O00479 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC17.49■□□□□ 0.39
HMGN4O00479 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC17.49■□□□□ 0.39
HMGN4O00479 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC17.49■□□□□ 0.39
HMGN4O00479 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC17.49■□□□□ 0.39
HMGN4O00479 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
HMGN4O00479 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC17.49■□□□□ 0.39
HMGN4O00479 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
HMGN4O00479 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC17.49■□□□□ 0.39
HMGN4O00479 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
HMGN4O00479 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HMGN4O00479 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGN4O00479 AL357033.4-201ENST00000617703 1807 ntBASIC17.49■□□□□ 0.39
HMGN4O00479 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGN4O00479 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGN4O00479 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGN4O00479 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HMGN4O00479 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC17.48■□□□□ 0.39
HMGN4O00479 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC17.48■□□□□ 0.39
HMGN4O00479 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HMGN4O00479 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC17.48■□□□□ 0.39
HMGN4O00479 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HMGN4O00479 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
HMGN4O00479 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGN4O00479 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC17.48■□□□□ 0.39
HMGN4O00479 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGN4O00479 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGN4O00479 PRORSD1P-201ENST00000295112 541 ntBASIC17.48■□□□□ 0.39
HMGN4O00479 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
HMGN4O00479 SAPCD2P4-201ENST00000424595 1171 ntBASIC17.48■□□□□ 0.39
HMGN4O00479 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC17.48■□□□□ 0.39
HMGN4O00479 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC17.48■□□□□ 0.39
HMGN4O00479 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC17.48■□□□□ 0.39
HMGN4O00479 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC17.48■□□□□ 0.39
HMGN4O00479 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC17.48■□□□□ 0.39
HMGN4O00479 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC17.48■□□□□ 0.39
HMGN4O00479 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC17.48■□□□□ 0.39
HMGN4O00479 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGN4O00479 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC17.48■□□□□ 0.39
HMGN4O00479 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGN4O00479 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGN4O00479 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC17.48■□□□□ 0.39
HMGN4O00479 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
HMGN4O00479 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGN4O00479 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC17.48■□□□□ 0.39
HMGN4O00479 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC17.48■□□□□ 0.39
HMGN4O00479 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HMGN4O00479 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC17.48■□□□□ 0.39
HMGN4O00479 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HMGN4O00479 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC17.47■□□□□ 0.39
HMGN4O00479 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGN4O00479 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGN4O00479 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGN4O00479 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC17.47■□□□□ 0.39
HMGN4O00479 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC17.47■□□□□ 0.39
HMGN4O00479 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HMGN4O00479 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC17.47■□□□□ 0.39
HMGN4O00479 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
HMGN4O00479 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGN4O00479 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC17.47■□□□□ 0.39
HMGN4O00479 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGN4O00479 FAM197Y1-201ENST00000421178 764 ntBASIC17.47■□□□□ 0.39
HMGN4O00479 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
HMGN4O00479 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 73.6 ms