Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC32.55■■■□□ 2.8
CCDC88BA6NC98 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC32.55■■■□□ 2.8
CCDC88BA6NC98 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
CCDC88BA6NC98 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC32.55■■■□□ 2.8
CCDC88BA6NC98 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC32.55■■■□□ 2.8
CCDC88BA6NC98 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
CCDC88BA6NC98 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC32.55■■■□□ 2.8
CCDC88BA6NC98 KRT89P-201ENST00000620027 1478 ntBASIC32.55■■■□□ 2.8
CCDC88BA6NC98 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
CCDC88BA6NC98 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC32.55■■■□□ 2.8
CCDC88BA6NC98 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.8
CCDC88BA6NC98 LSM5-204ENST00000409909 740 ntTSL 2 BASIC32.54■■■□□ 2.8
CCDC88BA6NC98 AC024563.2-201ENST00000603282 481 ntBASIC32.54■■■□□ 2.8
CCDC88BA6NC98 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC32.54■■■□□ 2.8
CCDC88BA6NC98 CCNC-219ENST00000627680 896 ntTSL 5 BASIC32.54■■■□□ 2.8
CCDC88BA6NC98 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC32.54■■■□□ 2.8
CCDC88BA6NC98 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC32.54■■■□□ 2.8
CCDC88BA6NC98 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC32.54■■■□□ 2.8
CCDC88BA6NC98 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.8
CCDC88BA6NC98 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC32.54■■■□□ 2.8
CCDC88BA6NC98 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.8
CCDC88BA6NC98 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.8
CCDC88BA6NC98 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC32.54■■■□□ 2.8
CCDC88BA6NC98 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC32.54■■■□□ 2.8
CCDC88BA6NC98 PPIE-208ENST00000470213 927 ntTSL 3 BASIC32.54■■■□□ 2.8
CCDC88BA6NC98 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC32.54■■■□□ 2.8
CCDC88BA6NC98 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC32.54■■■□□ 2.8
CCDC88BA6NC98 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC32.54■■■□□ 2.8
CCDC88BA6NC98 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC32.54■■■□□ 2.8
CCDC88BA6NC98 IGHV3-41-201ENST00000613121 348 ntBASIC32.54■■■□□ 2.8
CCDC88BA6NC98 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC32.54■■■□□ 2.8
CCDC88BA6NC98 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC32.54■■■□□ 2.8
CCDC88BA6NC98 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC32.53■■■□□ 2.8
CCDC88BA6NC98 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC32.53■■■□□ 2.8
CCDC88BA6NC98 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
CCDC88BA6NC98 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC32.53■■■□□ 2.8
CCDC88BA6NC98 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
CCDC88BA6NC98 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
CCDC88BA6NC98 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC32.53■■■□□ 2.8
CCDC88BA6NC98 AC120114.3-201ENST00000611923 658 ntBASIC32.53■■■□□ 2.8
CCDC88BA6NC98 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC32.53■■■□□ 2.8
CCDC88BA6NC98 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC32.53■■■□□ 2.8
CCDC88BA6NC98 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC32.53■■■□□ 2.8
CCDC88BA6NC98 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
CCDC88BA6NC98 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
CCDC88BA6NC98 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC32.53■■■□□ 2.8
CCDC88BA6NC98 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC32.52■■■□□ 2.8
CCDC88BA6NC98 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC32.52■■■□□ 2.8
CCDC88BA6NC98 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC32.52■■■□□ 2.8
CCDC88BA6NC98 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC32.52■■■□□ 2.8
CCDC88BA6NC98 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC32.52■■■□□ 2.8
CCDC88BA6NC98 PPOX-214ENST00000535223 664 ntTSL 3 BASIC32.52■■■□□ 2.8
CCDC88BA6NC98 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC32.52■■■□□ 2.8
CCDC88BA6NC98 TPM1-218ENST00000559281 851 ntTSL 5 BASIC32.52■■■□□ 2.8
CCDC88BA6NC98 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC32.52■■■□□ 2.8
CCDC88BA6NC98 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC32.52■■■□□ 2.8
CCDC88BA6NC98 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC32.52■■■□□ 2.8
CCDC88BA6NC98 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC32.51■■■□□ 2.8
CCDC88BA6NC98 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC32.51■■■□□ 2.8
CCDC88BA6NC98 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC32.51■■■□□ 2.8
CCDC88BA6NC98 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC32.51■■■□□ 2.79
CCDC88BA6NC98 AC124864.1-201ENST00000623408 392 ntBASIC32.51■■■□□ 2.79
CCDC88BA6NC98 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC32.51■■■□□ 2.79
CCDC88BA6NC98 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC32.51■■■□□ 2.79
CCDC88BA6NC98 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC32.51■■■□□ 2.79
CCDC88BA6NC98 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC32.51■■■□□ 2.79
CCDC88BA6NC98 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC32.51■■■□□ 2.79
CCDC88BA6NC98 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC32.5■■■□□ 2.79
CCDC88BA6NC98 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC32.5■■■□□ 2.79
CCDC88BA6NC98 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
CCDC88BA6NC98 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC32.5■■■□□ 2.79
CCDC88BA6NC98 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC32.5■■■□□ 2.79
CCDC88BA6NC98 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC32.5■■■□□ 2.79
CCDC88BA6NC98 REEP1-209ENST00000541910 969 ntTSL 2 BASIC32.5■■■□□ 2.79
CCDC88BA6NC98 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC32.5■■■□□ 2.79
CCDC88BA6NC98 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
CCDC88BA6NC98 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC32.5■■■□□ 2.79
CCDC88BA6NC98 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC32.5■■■□□ 2.79
CCDC88BA6NC98 BNIP3P18-201ENST00000593976 575 ntBASIC32.5■■■□□ 2.79
CCDC88BA6NC98 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC32.5■■■□□ 2.79
CCDC88BA6NC98 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC32.5■■■□□ 2.79
CCDC88BA6NC98 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC32.5■■■□□ 2.79
CCDC88BA6NC98 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
CCDC88BA6NC98 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC32.5■■■□□ 2.79
CCDC88BA6NC98 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
CCDC88BA6NC98 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
CCDC88BA6NC98 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC32.49■■■□□ 2.79
CCDC88BA6NC98 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC32.49■■■□□ 2.79
CCDC88BA6NC98 NUS1P2-201ENST00000417358 873 ntBASIC32.49■■■□□ 2.79
CCDC88BA6NC98 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC32.49■■■□□ 2.79
CCDC88BA6NC98 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC32.49■■■□□ 2.79
CCDC88BA6NC98 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC32.49■■■□□ 2.79
CCDC88BA6NC98 KRT8P50-201ENST00000562022 1438 ntBASIC32.49■■■□□ 2.79
CCDC88BA6NC98 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC32.49■■■□□ 2.79
CCDC88BA6NC98 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC32.49■■■□□ 2.79
CCDC88BA6NC98 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC32.49■■■□□ 2.79
CCDC88BA6NC98 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC32.49■■■□□ 2.79
CCDC88BA6NC98 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC32.48■■■□□ 2.79
CCDC88BA6NC98 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.79
CCDC88BA6NC98 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC32.48■■■□□ 2.79
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms