Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 SAPCD2P4-201ENST00000424595 1171 ntBASIC25.37■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC25.37■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 AC004980.1-204ENST00000429707 299 ntBASIC25.37■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC25.37■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC25.37■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC25.37■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC25.37■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC25.37■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC25.37■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC25.37■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC25.36■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC25.36■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC25.36■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC25.36■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC25.36■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC25.36■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC25.36■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC25.36■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 TSPY23P-201ENST00000440136 739 ntBASIC25.36■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 AC011506.1-201ENST00000474329 610 ntBASIC25.36■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC25.36■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC25.36■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC25.36■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC25.36■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC25.36■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC25.36■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC25.36■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC25.36■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC25.35■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC25.35■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC25.35■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 NIFKP9-201ENST00000419265 221 ntBASIC25.35■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC25.35■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 RPS15-203ENST00000586096 570 ntTSL 2 BASIC25.35■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC25.35■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 AC026471.5-201ENST00000615068 467 ntBASIC25.35■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC25.35■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC25.35■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC25.34■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC25.34■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC25.34■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC25.34■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC25.34■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC25.34■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 AC018470.1-201ENST00000624790 3129 ntBASIC25.34■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC25.34■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 AP003071.4-201ENST00000562276 1284 ntBASIC25.34■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC25.34■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC25.34■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC25.34■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC25.34■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC25.33■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC25.33■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC25.33■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC25.33■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC25.33■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC25.33■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 USP39-202ENST00000409025 1946 ntTSL 5 BASIC25.33■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC25.33■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC25.33■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC25.33■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC25.33■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 UBQLN4P1-201ENST00000461599 1801 ntBASIC25.33■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms