Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC19.67■□□□□ 0.74
USP3Q9Y6I4 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC19.67■□□□□ 0.74
USP3Q9Y6I4 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC19.67■□□□□ 0.74
USP3Q9Y6I4 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC19.67■□□□□ 0.74
USP3Q9Y6I4 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP3Q9Y6I4 AC093503.3-201ENST00000624917 2352 ntBASIC19.67■□□□□ 0.74
USP3Q9Y6I4 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
USP3Q9Y6I4 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP3Q9Y6I4 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC19.67■□□□□ 0.74
USP3Q9Y6I4 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
USP3Q9Y6I4 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC19.67■□□□□ 0.74
USP3Q9Y6I4 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP3Q9Y6I4 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP3Q9Y6I4 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC19.67■□□□□ 0.74
USP3Q9Y6I4 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP3Q9Y6I4 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP3Q9Y6I4 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC19.66■□□□□ 0.74
USP3Q9Y6I4 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
USP3Q9Y6I4 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
USP3Q9Y6I4 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC19.66■□□□□ 0.74
USP3Q9Y6I4 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
USP3Q9Y6I4 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
USP3Q9Y6I4 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
USP3Q9Y6I4 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC19.66■□□□□ 0.74
USP3Q9Y6I4 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
USP3Q9Y6I4 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
USP3Q9Y6I4 MIR564-202ENST00000385049 94 ntBASIC19.66■□□□□ 0.74
USP3Q9Y6I4 RNF152P1-201ENST00000397754 604 ntBASIC19.66■□□□□ 0.74
USP3Q9Y6I4 AP000523.1-201ENST00000398242 1049 ntBASIC19.66■□□□□ 0.74
USP3Q9Y6I4 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC19.66■□□□□ 0.74
USP3Q9Y6I4 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC19.66■□□□□ 0.74
USP3Q9Y6I4 AL441883.1-201ENST00000566170 1045 ntBASIC19.66■□□□□ 0.74
USP3Q9Y6I4 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC19.66■□□□□ 0.74
USP3Q9Y6I4 AC010331.1-201ENST00000611423 582 ntBASIC19.66■□□□□ 0.74
USP3Q9Y6I4 AC083906.6-201ENST00000641366 219 ntBASIC19.66■□□□□ 0.74
USP3Q9Y6I4 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC19.66■□□□□ 0.74
USP3Q9Y6I4 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC19.66■□□□□ 0.74
USP3Q9Y6I4 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
USP3Q9Y6I4 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
USP3Q9Y6I4 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
USP3Q9Y6I4 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC19.65■□□□□ 0.74
USP3Q9Y6I4 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
USP3Q9Y6I4 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
USP3Q9Y6I4 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC19.65■□□□□ 0.74
USP3Q9Y6I4 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC19.65■□□□□ 0.74
USP3Q9Y6I4 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
USP3Q9Y6I4 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
USP3Q9Y6I4 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
USP3Q9Y6I4 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
USP3Q9Y6I4 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
USP3Q9Y6I4 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
USP3Q9Y6I4 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
USP3Q9Y6I4 ENSA-205ENST00000361532 792 ntTSL 2 BASIC19.65■□□□□ 0.74
USP3Q9Y6I4 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
USP3Q9Y6I4 TSPY5P-201ENST00000426936 936 ntBASIC19.65■□□□□ 0.74
USP3Q9Y6I4 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC19.65■□□□□ 0.74
USP3Q9Y6I4 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC19.65■□□□□ 0.74
USP3Q9Y6I4 AC063952.2-201ENST00000498792 1227 ntBASIC19.65■□□□□ 0.74
USP3Q9Y6I4 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
USP3Q9Y6I4 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC19.65■□□□□ 0.74
USP3Q9Y6I4 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC19.65■□□□□ 0.74
USP3Q9Y6I4 AL049597.2-201ENST00000565575 961 ntBASIC19.65■□□□□ 0.74
USP3Q9Y6I4 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
USP3Q9Y6I4 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
USP3Q9Y6I4 AL023973.1-201ENST00000624619 620 ntBASIC19.65■□□□□ 0.74
USP3Q9Y6I4 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
USP3Q9Y6I4 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
USP3Q9Y6I4 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
USP3Q9Y6I4 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
USP3Q9Y6I4 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC19.65■□□□□ 0.74
USP3Q9Y6I4 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
USP3Q9Y6I4 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
USP3Q9Y6I4 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC19.65■□□□□ 0.74
USP3Q9Y6I4 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
USP3Q9Y6I4 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC19.65■□□□□ 0.74
USP3Q9Y6I4 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
USP3Q9Y6I4 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
USP3Q9Y6I4 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC19.64■□□□□ 0.74
USP3Q9Y6I4 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
USP3Q9Y6I4 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.74
USP3Q9Y6I4 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.74
USP3Q9Y6I4 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
USP3Q9Y6I4 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
USP3Q9Y6I4 ANKRD20A18P-201ENST00000359341 492 ntBASIC19.64■□□□□ 0.73
USP3Q9Y6I4 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
USP3Q9Y6I4 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC19.64■□□□□ 0.73
USP3Q9Y6I4 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
USP3Q9Y6I4 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC19.64■□□□□ 0.73
USP3Q9Y6I4 NME3-204ENST00000563498 920 ntTSL 2 BASIC19.64■□□□□ 0.73
USP3Q9Y6I4 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
USP3Q9Y6I4 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
USP3Q9Y6I4 NFYC-AS1-201ENST00000606277 1687 ntBASIC19.64■□□□□ 0.73
USP3Q9Y6I4 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
USP3Q9Y6I4 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
USP3Q9Y6I4 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC19.64■□□□□ 0.73
USP3Q9Y6I4 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC19.64■□□□□ 0.73
USP3Q9Y6I4 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC19.63■□□□□ 0.73
USP3Q9Y6I4 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
USP3Q9Y6I4 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
USP3Q9Y6I4 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms