Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PCDHA3Q9Y5H8 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PCDHA3Q9Y5H8 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
PCDHA3Q9Y5H8 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PCDHA3Q9Y5H8 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC19.68■□□□□ 0.74
PCDHA3Q9Y5H8 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC19.68■□□□□ 0.74
PCDHA3Q9Y5H8 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
PCDHA3Q9Y5H8 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PCDHA3Q9Y5H8 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC19.68■□□□□ 0.74
PCDHA3Q9Y5H8 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC19.68■□□□□ 0.74
PCDHA3Q9Y5H8 TBCB-214ENST00000629269 413 ntTSL 5 BASIC19.68■□□□□ 0.74
PCDHA3Q9Y5H8 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PCDHA3Q9Y5H8 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC19.68■□□□□ 0.74
PCDHA3Q9Y5H8 ABALON-201ENST00000629058 1903 ntBASIC19.68■□□□□ 0.74
PCDHA3Q9Y5H8 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PCDHA3Q9Y5H8 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC19.68■□□□□ 0.74
PCDHA3Q9Y5H8 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC19.68■□□□□ 0.74
PCDHA3Q9Y5H8 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC19.67■□□□□ 0.74
PCDHA3Q9Y5H8 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PCDHA3Q9Y5H8 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PCDHA3Q9Y5H8 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
PCDHA3Q9Y5H8 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.67■□□□□ 0.74
PCDHA3Q9Y5H8 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PCDHA3Q9Y5H8 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
PCDHA3Q9Y5H8 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PCDHA3Q9Y5H8 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
PCDHA3Q9Y5H8 PPP1R14BP5-201ENST00000440334 435 ntBASIC19.67■□□□□ 0.74
PCDHA3Q9Y5H8 ADM-205ENST00000528544 586 ntTSL 2 BASIC19.67■□□□□ 0.74
PCDHA3Q9Y5H8 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC19.67■□□□□ 0.74
PCDHA3Q9Y5H8 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC19.67■□□□□ 0.74
PCDHA3Q9Y5H8 AL353708.3-201ENST00000610272 989 ntBASIC19.67■□□□□ 0.74
PCDHA3Q9Y5H8 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC19.67■□□□□ 0.74
PCDHA3Q9Y5H8 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PCDHA3Q9Y5H8 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
PCDHA3Q9Y5H8 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
PCDHA3Q9Y5H8 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
PCDHA3Q9Y5H8 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
PCDHA3Q9Y5H8 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC19.67■□□□□ 0.74
PCDHA3Q9Y5H8 AC018470.1-201ENST00000624790 3129 ntBASIC19.67■□□□□ 0.74
PCDHA3Q9Y5H8 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PCDHA3Q9Y5H8 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.66■□□□□ 0.74
PCDHA3Q9Y5H8 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC19.66■□□□□ 0.74
PCDHA3Q9Y5H8 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PCDHA3Q9Y5H8 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PCDHA3Q9Y5H8 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
PCDHA3Q9Y5H8 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC19.66■□□□□ 0.74
PCDHA3Q9Y5H8 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC19.66■□□□□ 0.74
PCDHA3Q9Y5H8 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PCDHA3Q9Y5H8 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC19.66■□□□□ 0.74
PCDHA3Q9Y5H8 AC091390.4-202ENST00000476426 537 ntBASIC19.66■□□□□ 0.74
PCDHA3Q9Y5H8 RPS2P4-201ENST00000476944 856 ntBASIC19.66■□□□□ 0.74
PCDHA3Q9Y5H8 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PCDHA3Q9Y5H8 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC19.66■□□□□ 0.74
PCDHA3Q9Y5H8 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC19.66■□□□□ 0.74
PCDHA3Q9Y5H8 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PCDHA3Q9Y5H8 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PCDHA3Q9Y5H8 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PCDHA3Q9Y5H8 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
PCDHA3Q9Y5H8 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PCDHA3Q9Y5H8 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PCDHA3Q9Y5H8 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
PCDHA3Q9Y5H8 AL162741.1-201ENST00000565563 1558 ntBASIC19.66■□□□□ 0.74
PCDHA3Q9Y5H8 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC19.65■□□□□ 0.74
PCDHA3Q9Y5H8 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PCDHA3Q9Y5H8 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC19.65■□□□□ 0.74
PCDHA3Q9Y5H8 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PCDHA3Q9Y5H8 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PCDHA3Q9Y5H8 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
PCDHA3Q9Y5H8 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PCDHA3Q9Y5H8 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PCDHA3Q9Y5H8 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PCDHA3Q9Y5H8 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
PCDHA3Q9Y5H8 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PCDHA3Q9Y5H8 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PCDHA3Q9Y5H8 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
PCDHA3Q9Y5H8 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PCDHA3Q9Y5H8 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC19.65■□□□□ 0.74
PCDHA3Q9Y5H8 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
PCDHA3Q9Y5H8 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PCDHA3Q9Y5H8 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PCDHA3Q9Y5H8 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PCDHA3Q9Y5H8 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC19.65■□□□□ 0.74
PCDHA3Q9Y5H8 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
PCDHA3Q9Y5H8 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC19.65■□□□□ 0.74
PCDHA3Q9Y5H8 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
PCDHA3Q9Y5H8 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC19.65■□□□□ 0.74
PCDHA3Q9Y5H8 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PCDHA3Q9Y5H8 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
PCDHA3Q9Y5H8 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC19.64■□□□□ 0.74
PCDHA3Q9Y5H8 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
PCDHA3Q9Y5H8 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
PCDHA3Q9Y5H8 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
PCDHA3Q9Y5H8 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
PCDHA3Q9Y5H8 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
PCDHA3Q9Y5H8 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PCDHA3Q9Y5H8 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
PCDHA3Q9Y5H8 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC19.64■□□□□ 0.73
PCDHA3Q9Y5H8 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC19.64■□□□□ 0.73
PCDHA3Q9Y5H8 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
PCDHA3Q9Y5H8 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms