Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AL355355.2-201ENST00000442321 338 ntBASIC18.72■□□□□ 0.59
VPS9D1Q9Y2B5 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
VPS9D1Q9Y2B5 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VPS9D1Q9Y2B5 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC18.72■□□□□ 0.59
VPS9D1Q9Y2B5 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC18.72■□□□□ 0.59
VPS9D1Q9Y2B5 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC18.72■□□□□ 0.59
VPS9D1Q9Y2B5 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC18.72■□□□□ 0.59
VPS9D1Q9Y2B5 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VPS9D1Q9Y2B5 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VPS9D1Q9Y2B5 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC18.72■□□□□ 0.59
VPS9D1Q9Y2B5 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC18.72■□□□□ 0.59
VPS9D1Q9Y2B5 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC18.72■□□□□ 0.59
VPS9D1Q9Y2B5 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VPS9D1Q9Y2B5 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
VPS9D1Q9Y2B5 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
VPS9D1Q9Y2B5 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VPS9D1Q9Y2B5 ANO7L1-203ENST00000602586 1720 ntBASIC18.71■□□□□ 0.59
VPS9D1Q9Y2B5 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC18.71■□□□□ 0.59
VPS9D1Q9Y2B5 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS9D1Q9Y2B5 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC18.71■□□□□ 0.59
VPS9D1Q9Y2B5 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VPS9D1Q9Y2B5 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS9D1Q9Y2B5 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS9D1Q9Y2B5 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VPS9D1Q9Y2B5 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC18.71■□□□□ 0.59
VPS9D1Q9Y2B5 GRAMD4P8-201ENST00000605465 1115 ntBASIC18.71■□□□□ 0.59
VPS9D1Q9Y2B5 AC113410.3-201ENST00000623366 203 ntBASIC18.71■□□□□ 0.59
VPS9D1Q9Y2B5 MYC-208ENST00000641036 567 ntBASIC18.71■□□□□ 0.59
VPS9D1Q9Y2B5 AC068587.9-201ENST00000641814 219 ntBASIC18.71■□□□□ 0.59
VPS9D1Q9Y2B5 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC18.71■□□□□ 0.59
VPS9D1Q9Y2B5 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS9D1Q9Y2B5 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC18.71■□□□□ 0.59
VPS9D1Q9Y2B5 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS9D1Q9Y2B5 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS9D1Q9Y2B5 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS9D1Q9Y2B5 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC18.71■□□□□ 0.59
VPS9D1Q9Y2B5 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS9D1Q9Y2B5 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
VPS9D1Q9Y2B5 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS9D1Q9Y2B5 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VPS9D1Q9Y2B5 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
VPS9D1Q9Y2B5 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS9D1Q9Y2B5 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
VPS9D1Q9Y2B5 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS9D1Q9Y2B5 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS9D1Q9Y2B5 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC18.7■□□□□ 0.58
VPS9D1Q9Y2B5 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS9D1Q9Y2B5 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC18.7■□□□□ 0.58
VPS9D1Q9Y2B5 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC18.7■□□□□ 0.58
VPS9D1Q9Y2B5 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
VPS9D1Q9Y2B5 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC18.7■□□□□ 0.58
VPS9D1Q9Y2B5 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC18.7■□□□□ 0.58
VPS9D1Q9Y2B5 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC18.7■□□□□ 0.58
VPS9D1Q9Y2B5 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC18.7■□□□□ 0.58
VPS9D1Q9Y2B5 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC18.7■□□□□ 0.58
VPS9D1Q9Y2B5 USP36-216ENST00000589424 970 ntTSL 5 BASIC18.7■□□□□ 0.58
VPS9D1Q9Y2B5 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC18.7■□□□□ 0.58
VPS9D1Q9Y2B5 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS9D1Q9Y2B5 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC18.7■□□□□ 0.58
VPS9D1Q9Y2B5 TMEM191A-211ENST00000637163 1067 ntBASIC18.7■□□□□ 0.58
VPS9D1Q9Y2B5 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS9D1Q9Y2B5 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS9D1Q9Y2B5 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS9D1Q9Y2B5 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
VPS9D1Q9Y2B5 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS9D1Q9Y2B5 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VPS9D1Q9Y2B5 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC18.7■□□□□ 0.58
VPS9D1Q9Y2B5 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS9D1Q9Y2B5 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
VPS9D1Q9Y2B5 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC18.69■□□□□ 0.58
VPS9D1Q9Y2B5 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC18.69■□□□□ 0.58
VPS9D1Q9Y2B5 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS9D1Q9Y2B5 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
VPS9D1Q9Y2B5 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
VPS9D1Q9Y2B5 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC18.69■□□□□ 0.58
VPS9D1Q9Y2B5 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
VPS9D1Q9Y2B5 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VPS9D1Q9Y2B5 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS9D1Q9Y2B5 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC18.69■□□□□ 0.58
VPS9D1Q9Y2B5 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS9D1Q9Y2B5 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS9D1Q9Y2B5 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS9D1Q9Y2B5 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC18.69■□□□□ 0.58
VPS9D1Q9Y2B5 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC18.69■□□□□ 0.58
VPS9D1Q9Y2B5 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC18.69■□□□□ 0.58
VPS9D1Q9Y2B5 CYGB-204ENST00000589342 815 ntTSL 3 BASIC18.69■□□□□ 0.58
VPS9D1Q9Y2B5 AP006294.2-201ENST00000641667 209 ntBASIC18.69■□□□□ 0.58
VPS9D1Q9Y2B5 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS9D1Q9Y2B5 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS9D1Q9Y2B5 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS9D1Q9Y2B5 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS9D1Q9Y2B5 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS9D1Q9Y2B5 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
VPS9D1Q9Y2B5 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VPS9D1Q9Y2B5 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS9D1Q9Y2B5 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS9D1Q9Y2B5 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC18.68■□□□□ 0.58
VPS9D1Q9Y2B5 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VPS9D1Q9Y2B5 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.68■□□□□ 0.58
VPS9D1Q9Y2B5 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms