Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC19.54■□□□□ 0.72
AP4E1Q9UPM8 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
AP4E1Q9UPM8 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
AP4E1Q9UPM8 COBL-210ENST00000632460 1941 ntTSL 5 BASIC19.53■□□□□ 0.72
AP4E1Q9UPM8 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC19.53■□□□□ 0.72
AP4E1Q9UPM8 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
AP4E1Q9UPM8 RCC2P3-201ENST00000418112 1537 ntBASIC19.53■□□□□ 0.72
AP4E1Q9UPM8 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC19.53■□□□□ 0.72
AP4E1Q9UPM8 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
AP4E1Q9UPM8 PRR31-201ENST00000371629 978 ntTSL 2 BASIC19.53■□□□□ 0.72
AP4E1Q9UPM8 AL596275.1-201ENST00000423464 877 ntBASIC19.53■□□□□ 0.72
AP4E1Q9UPM8 TSPY15P-201ENST00000457163 923 ntBASIC19.53■□□□□ 0.72
AP4E1Q9UPM8 CA15P1-201ENST00000481698 905 ntBASIC19.53■□□□□ 0.72
AP4E1Q9UPM8 FITM1-202ENST00000559294 800 ntBASIC19.53■□□□□ 0.72
AP4E1Q9UPM8 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
AP4E1Q9UPM8 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC19.53■□□□□ 0.72
AP4E1Q9UPM8 ANO7L1-203ENST00000602586 1720 ntBASIC19.53■□□□□ 0.72
AP4E1Q9UPM8 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC19.53■□□□□ 0.72
AP4E1Q9UPM8 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC19.53■□□□□ 0.72
AP4E1Q9UPM8 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
AP4E1Q9UPM8 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
AP4E1Q9UPM8 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
AP4E1Q9UPM8 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
AP4E1Q9UPM8 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
AP4E1Q9UPM8 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC19.52■□□□□ 0.72
AP4E1Q9UPM8 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC19.52■□□□□ 0.72
AP4E1Q9UPM8 MTMR9LP-203ENST00000426597 1545 ntBASIC19.52■□□□□ 0.72
AP4E1Q9UPM8 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
AP4E1Q9UPM8 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC19.52■□□□□ 0.72
AP4E1Q9UPM8 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
AP4E1Q9UPM8 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC19.52■□□□□ 0.72
AP4E1Q9UPM8 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
AP4E1Q9UPM8 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
AP4E1Q9UPM8 MIR1238-201ENST00000408483 83 ntBASIC19.52■□□□□ 0.72
AP4E1Q9UPM8 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
AP4E1Q9UPM8 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC19.52■□□□□ 0.72
AP4E1Q9UPM8 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC19.52■□□□□ 0.72
AP4E1Q9UPM8 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC19.52■□□□□ 0.72
AP4E1Q9UPM8 AC008622.2-201ENST00000617006 1229 ntBASIC19.52■□□□□ 0.72
AP4E1Q9UPM8 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
AP4E1Q9UPM8 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC19.52■□□□□ 0.72
AP4E1Q9UPM8 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
AP4E1Q9UPM8 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
AP4E1Q9UPM8 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
AP4E1Q9UPM8 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
AP4E1Q9UPM8 MCC-208ENST00000514701 2855 ntTSL 2 BASIC19.52■□□□□ 0.71
AP4E1Q9UPM8 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.71
AP4E1Q9UPM8 SNAI3-AS1-205ENST00000568633 2096 ntBASIC19.52■□□□□ 0.71
AP4E1Q9UPM8 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
AP4E1Q9UPM8 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
AP4E1Q9UPM8 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
AP4E1Q9UPM8 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC19.51■□□□□ 0.71
AP4E1Q9UPM8 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
AP4E1Q9UPM8 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
AP4E1Q9UPM8 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
AP4E1Q9UPM8 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC19.51■□□□□ 0.71
AP4E1Q9UPM8 BUB3-202ENST00000368859 667 ntTSL 3 BASIC19.51■□□□□ 0.71
AP4E1Q9UPM8 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
AP4E1Q9UPM8 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
AP4E1Q9UPM8 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
AP4E1Q9UPM8 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC19.51■□□□□ 0.71
AP4E1Q9UPM8 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
AP4E1Q9UPM8 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC19.51■□□□□ 0.71
AP4E1Q9UPM8 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
AP4E1Q9UPM8 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
AP4E1Q9UPM8 NFYC-AS1-201ENST00000606277 1687 ntBASIC19.51■□□□□ 0.71
AP4E1Q9UPM8 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
AP4E1Q9UPM8 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
AP4E1Q9UPM8 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC19.51■□□□□ 0.71
AP4E1Q9UPM8 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC19.51■□□□□ 0.71
AP4E1Q9UPM8 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC19.51■□□□□ 0.71
AP4E1Q9UPM8 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC19.51■□□□□ 0.71
AP4E1Q9UPM8 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC19.51■□□□□ 0.71
AP4E1Q9UPM8 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
AP4E1Q9UPM8 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC19.51■□□□□ 0.71
AP4E1Q9UPM8 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC19.5■□□□□ 0.71
AP4E1Q9UPM8 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
AP4E1Q9UPM8 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
AP4E1Q9UPM8 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
AP4E1Q9UPM8 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
AP4E1Q9UPM8 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
AP4E1Q9UPM8 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
AP4E1Q9UPM8 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
AP4E1Q9UPM8 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
AP4E1Q9UPM8 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
AP4E1Q9UPM8 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
AP4E1Q9UPM8 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
AP4E1Q9UPM8 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC19.5■□□□□ 0.71
AP4E1Q9UPM8 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC19.5■□□□□ 0.71
AP4E1Q9UPM8 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC19.5■□□□□ 0.71
AP4E1Q9UPM8 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC19.5■□□□□ 0.71
AP4E1Q9UPM8 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
AP4E1Q9UPM8 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
AP4E1Q9UPM8 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
AP4E1Q9UPM8 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
AP4E1Q9UPM8 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
AP4E1Q9UPM8 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
AP4E1Q9UPM8 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC19.49■□□□□ 0.71
AP4E1Q9UPM8 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
AP4E1Q9UPM8 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms