Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.21■□□□□ 0.5
VPS4AQ9UN37 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
VPS4AQ9UN37 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC18.2■□□□□ 0.5
VPS4AQ9UN37 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS4AQ9UN37 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
VPS4AQ9UN37 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS4AQ9UN37 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
VPS4AQ9UN37 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS4AQ9UN37 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS4AQ9UN37 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
VPS4AQ9UN37 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC18.2■□□□□ 0.5
VPS4AQ9UN37 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC18.2■□□□□ 0.5
VPS4AQ9UN37 CROCCP3-202ENST00000420820 1947 ntBASIC18.2■□□□□ 0.5
VPS4AQ9UN37 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC18.2■□□□□ 0.5
VPS4AQ9UN37 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS4AQ9UN37 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
VPS4AQ9UN37 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC18.2■□□□□ 0.5
VPS4AQ9UN37 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS4AQ9UN37 AP002982.1-201ENST00000492365 877 ntBASIC18.2■□□□□ 0.5
VPS4AQ9UN37 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
VPS4AQ9UN37 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC18.2■□□□□ 0.5
VPS4AQ9UN37 NTF6B-201ENST00000591913 560 ntBASIC18.2■□□□□ 0.5
VPS4AQ9UN37 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC18.2■□□□□ 0.5
VPS4AQ9UN37 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
VPS4AQ9UN37 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
VPS4AQ9UN37 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS4AQ9UN37 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS4AQ9UN37 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS4AQ9UN37 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
VPS4AQ9UN37 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS4AQ9UN37 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS4AQ9UN37 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC18.19■□□□□ 0.5
VPS4AQ9UN37 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS4AQ9UN37 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VPS4AQ9UN37 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC18.19■□□□□ 0.5
VPS4AQ9UN37 AC006333.2-201ENST00000607957 2099 ntBASIC18.19■□□□□ 0.5
VPS4AQ9UN37 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
VPS4AQ9UN37 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
VPS4AQ9UN37 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
VPS4AQ9UN37 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
VPS4AQ9UN37 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS4AQ9UN37 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC18.19■□□□□ 0.5
VPS4AQ9UN37 TERF1P1-201ENST00000311003 1181 ntBASIC18.19■□□□□ 0.5
VPS4AQ9UN37 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS4AQ9UN37 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
VPS4AQ9UN37 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC18.19■□□□□ 0.5
VPS4AQ9UN37 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
VPS4AQ9UN37 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC18.19■□□□□ 0.5
VPS4AQ9UN37 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
VPS4AQ9UN37 KRT18P16-201ENST00000510337 1294 ntBASIC18.19■□□□□ 0.5
VPS4AQ9UN37 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS4AQ9UN37 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC18.19■□□□□ 0.5
VPS4AQ9UN37 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC18.19■□□□□ 0.5
VPS4AQ9UN37 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC18.19■□□□□ 0.5
VPS4AQ9UN37 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS4AQ9UN37 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC18.19■□□□□ 0.5
VPS4AQ9UN37 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VPS4AQ9UN37 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VPS4AQ9UN37 AC079598.2-202ENST00000546624 1451 ntBASIC18.19■□□□□ 0.5
VPS4AQ9UN37 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC18.19■□□□□ 0.5
VPS4AQ9UN37 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.19■□□□□ 0.5
VPS4AQ9UN37 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS4AQ9UN37 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS4AQ9UN37 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VPS4AQ9UN37 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC18.18■□□□□ 0.5
VPS4AQ9UN37 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VPS4AQ9UN37 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VPS4AQ9UN37 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS4AQ9UN37 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS4AQ9UN37 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC18.18■□□□□ 0.5
VPS4AQ9UN37 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC18.18■□□□□ 0.5
VPS4AQ9UN37 AC007613.1-201ENST00000572811 2597 ntBASIC18.18■□□□□ 0.5
VPS4AQ9UN37 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS4AQ9UN37 KRT8P9-201ENST00000558927 1449 ntBASIC18.18■□□□□ 0.5
VPS4AQ9UN37 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS4AQ9UN37 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS4AQ9UN37 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS4AQ9UN37 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS4AQ9UN37 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS4AQ9UN37 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC18.18■□□□□ 0.5
VPS4AQ9UN37 TUBB8P6-201ENST00000436895 1288 ntBASIC18.18■□□□□ 0.5
VPS4AQ9UN37 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC18.18■□□□□ 0.5
VPS4AQ9UN37 DUT-205ENST00000558813 769 ntTSL 2 BASIC18.18■□□□□ 0.5
VPS4AQ9UN37 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC18.18■□□□□ 0.5
VPS4AQ9UN37 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC18.18■□□□□ 0.5
VPS4AQ9UN37 REXO1L10P-201ENST00000615707 1290 ntBASIC18.18■□□□□ 0.5
VPS4AQ9UN37 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC18.18■□□□□ 0.5
VPS4AQ9UN37 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS4AQ9UN37 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VPS4AQ9UN37 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
VPS4AQ9UN37 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VPS4AQ9UN37 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
VPS4AQ9UN37 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.18■□□□□ 0.5
VPS4AQ9UN37 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
VPS4AQ9UN37 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
VPS4AQ9UN37 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC18.18■□□□□ 0.5
VPS4AQ9UN37 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18.17■□□□□ 0.5
VPS4AQ9UN37 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS4AQ9UN37 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS4AQ9UN37 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms