Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC20.59■□□□□ 0.89
LIMA1Q9UHB6 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC20.59■□□□□ 0.89
LIMA1Q9UHB6 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LIMA1Q9UHB6 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
LIMA1Q9UHB6 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
LIMA1Q9UHB6 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LIMA1Q9UHB6 AC239809.2-201ENST00000415381 517 ntBASIC20.59■□□□□ 0.89
LIMA1Q9UHB6 HLA-L-209ENST00000420110 1011 ntBASIC20.59■□□□□ 0.89
LIMA1Q9UHB6 APTR-205ENST00000447009 902 ntTSL 2 BASIC20.59■□□□□ 0.89
LIMA1Q9UHB6 AC133681.1-201ENST00000465482 601 ntBASIC20.59■□□□□ 0.89
LIMA1Q9UHB6 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC20.59■□□□□ 0.89
LIMA1Q9UHB6 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC20.59■□□□□ 0.89
LIMA1Q9UHB6 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
LIMA1Q9UHB6 AC131212.4-201ENST00000623606 975 ntBASIC20.59■□□□□ 0.89
LIMA1Q9UHB6 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
LIMA1Q9UHB6 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC20.59■□□□□ 0.89
LIMA1Q9UHB6 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LIMA1Q9UHB6 CD276-201ENST00000318424 2738 ntTSL 5 BASIC20.59■□□□□ 0.89
LIMA1Q9UHB6 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LIMA1Q9UHB6 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC20.59■□□□□ 0.89
LIMA1Q9UHB6 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
LIMA1Q9UHB6 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
LIMA1Q9UHB6 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC20.58■□□□□ 0.89
LIMA1Q9UHB6 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
LIMA1Q9UHB6 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LIMA1Q9UHB6 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC20.58■□□□□ 0.89
LIMA1Q9UHB6 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
LIMA1Q9UHB6 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
LIMA1Q9UHB6 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
LIMA1Q9UHB6 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC20.58■□□□□ 0.89
LIMA1Q9UHB6 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LIMA1Q9UHB6 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LIMA1Q9UHB6 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC20.58■□□□□ 0.89
LIMA1Q9UHB6 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC20.58■□□□□ 0.89
LIMA1Q9UHB6 MMAB-206ENST00000540016 945 ntTSL 3 BASIC20.58■□□□□ 0.89
LIMA1Q9UHB6 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC20.58■□□□□ 0.89
LIMA1Q9UHB6 AC124016.1-201ENST00000609552 612 ntBASIC20.58■□□□□ 0.89
LIMA1Q9UHB6 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC20.58■□□□□ 0.88
LIMA1Q9UHB6 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC20.58■□□□□ 0.88
LIMA1Q9UHB6 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
LIMA1Q9UHB6 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
LIMA1Q9UHB6 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC20.58■□□□□ 0.88
LIMA1Q9UHB6 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
LIMA1Q9UHB6 AR-207ENST00000612010 3896 ntTSL 5 BASIC20.57■□□□□ 0.88
LIMA1Q9UHB6 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LIMA1Q9UHB6 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
LIMA1Q9UHB6 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC20.57■□□□□ 0.88
LIMA1Q9UHB6 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LIMA1Q9UHB6 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
LIMA1Q9UHB6 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LIMA1Q9UHB6 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LIMA1Q9UHB6 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
LIMA1Q9UHB6 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC20.57■□□□□ 0.88
LIMA1Q9UHB6 NIFKP9-201ENST00000419265 221 ntBASIC20.57■□□□□ 0.88
LIMA1Q9UHB6 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC20.57■□□□□ 0.88
LIMA1Q9UHB6 DERL1-203ENST00000419562 918 ntTSL 2 BASIC20.57■□□□□ 0.88
LIMA1Q9UHB6 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC20.57■□□□□ 0.88
LIMA1Q9UHB6 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC20.57■□□□□ 0.88
LIMA1Q9UHB6 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC20.57■□□□□ 0.88
LIMA1Q9UHB6 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC20.57■□□□□ 0.88
LIMA1Q9UHB6 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
LIMA1Q9UHB6 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LIMA1Q9UHB6 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC20.57■□□□□ 0.88
LIMA1Q9UHB6 AL357033.4-201ENST00000617703 1807 ntBASIC20.57■□□□□ 0.88
LIMA1Q9UHB6 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC20.57■□□□□ 0.88
LIMA1Q9UHB6 PCDHB18P-201ENST00000524813 2368 ntBASIC20.57■□□□□ 0.88
LIMA1Q9UHB6 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC20.57■□□□□ 0.88
LIMA1Q9UHB6 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LIMA1Q9UHB6 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LIMA1Q9UHB6 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LIMA1Q9UHB6 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
LIMA1Q9UHB6 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LIMA1Q9UHB6 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC20.56■□□□□ 0.88
LIMA1Q9UHB6 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LIMA1Q9UHB6 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LIMA1Q9UHB6 KRT8P45-201ENST00000414328 1447 ntBASIC20.56■□□□□ 0.88
LIMA1Q9UHB6 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
LIMA1Q9UHB6 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC20.56■□□□□ 0.88
LIMA1Q9UHB6 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
LIMA1Q9UHB6 AC091390.4-202ENST00000476426 537 ntBASIC20.56■□□□□ 0.88
LIMA1Q9UHB6 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC20.56■□□□□ 0.88
LIMA1Q9UHB6 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LIMA1Q9UHB6 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC20.56■□□□□ 0.88
LIMA1Q9UHB6 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LIMA1Q9UHB6 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
LIMA1Q9UHB6 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LIMA1Q9UHB6 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
LIMA1Q9UHB6 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC20.56■□□□□ 0.88
LIMA1Q9UHB6 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LIMA1Q9UHB6 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LIMA1Q9UHB6 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
LIMA1Q9UHB6 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
LIMA1Q9UHB6 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
LIMA1Q9UHB6 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LIMA1Q9UHB6 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LIMA1Q9UHB6 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC20.55■□□□□ 0.88
LIMA1Q9UHB6 AC112777.1-201ENST00000540175 1423 ntBASIC20.55■□□□□ 0.88
LIMA1Q9UHB6 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LIMA1Q9UHB6 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC20.55■□□□□ 0.88
LIMA1Q9UHB6 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms