Protein–RNA interactions for Protein: Q9H6T3

RPAP3, RNA polymerase II-associated protein 3, humanhuman

Predicted RBP Predictions only

Length 665 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP3Q9H6T3 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
RPAP3Q9H6T3 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RPAP3Q9H6T3 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC21.67■■□□□ 1.06
RPAP3Q9H6T3 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RPAP3Q9H6T3 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RPAP3Q9H6T3 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
RPAP3Q9H6T3 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RPAP3Q9H6T3 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RPAP3Q9H6T3 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
RPAP3Q9H6T3 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RPAP3Q9H6T3 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RPAP3Q9H6T3 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
RPAP3Q9H6T3 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RPAP3Q9H6T3 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
RPAP3Q9H6T3 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
RPAP3Q9H6T3 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC21.66■■□□□ 1.06
RPAP3Q9H6T3 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RPAP3Q9H6T3 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
RPAP3Q9H6T3 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
RPAP3Q9H6T3 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
RPAP3Q9H6T3 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC21.66■■□□□ 1.06
RPAP3Q9H6T3 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RPAP3Q9H6T3 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RPAP3Q9H6T3 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC21.66■■□□□ 1.06
RPAP3Q9H6T3 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
RPAP3Q9H6T3 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RPAP3Q9H6T3 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RPAP3Q9H6T3 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RPAP3Q9H6T3 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RPAP3Q9H6T3 PPIH-202ENST00000372549 327 ntTSL 3 BASIC21.66■■□□□ 1.06
RPAP3Q9H6T3 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RPAP3Q9H6T3 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RPAP3Q9H6T3 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC21.66■■□□□ 1.06
RPAP3Q9H6T3 TSPY22P-201ENST00000427496 604 ntBASIC21.66■■□□□ 1.06
RPAP3Q9H6T3 SDHD-206ENST00000528182 754 ntTSL 3 BASIC21.66■■□□□ 1.06
RPAP3Q9H6T3 RNF126P1-202ENST00000569893 925 ntBASIC21.66■■□□□ 1.06
RPAP3Q9H6T3 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
RPAP3Q9H6T3 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC21.66■■□□□ 1.06
RPAP3Q9H6T3 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC21.66■■□□□ 1.06
RPAP3Q9H6T3 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC21.66■■□□□ 1.06
RPAP3Q9H6T3 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
RPAP3Q9H6T3 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
RPAP3Q9H6T3 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RPAP3Q9H6T3 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
RPAP3Q9H6T3 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC21.66■■□□□ 1.06
RPAP3Q9H6T3 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC21.66■■□□□ 1.06
RPAP3Q9H6T3 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
RPAP3Q9H6T3 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC21.66■■□□□ 1.06
RPAP3Q9H6T3 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC21.65■■□□□ 1.06
RPAP3Q9H6T3 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
RPAP3Q9H6T3 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RPAP3Q9H6T3 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
RPAP3Q9H6T3 CHCHD2P8-201ENST00000429873 447 ntBASIC21.65■■□□□ 1.06
RPAP3Q9H6T3 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
RPAP3Q9H6T3 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC21.65■■□□□ 1.06
RPAP3Q9H6T3 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC21.65■■□□□ 1.06
RPAP3Q9H6T3 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC21.65■■□□□ 1.06
RPAP3Q9H6T3 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC21.65■■□□□ 1.06
RPAP3Q9H6T3 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RPAP3Q9H6T3 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
RPAP3Q9H6T3 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RPAP3Q9H6T3 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RPAP3Q9H6T3 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
RPAP3Q9H6T3 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RPAP3Q9H6T3 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RPAP3Q9H6T3 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC21.65■■□□□ 1.06
RPAP3Q9H6T3 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
RPAP3Q9H6T3 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC21.64■■□□□ 1.06
RPAP3Q9H6T3 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC21.64■■□□□ 1.06
RPAP3Q9H6T3 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
RPAP3Q9H6T3 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
RPAP3Q9H6T3 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC21.64■■□□□ 1.06
RPAP3Q9H6T3 AL158211.5-201ENST00000623583 2518 ntBASIC21.64■■□□□ 1.06
RPAP3Q9H6T3 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC21.64■■□□□ 1.06
RPAP3Q9H6T3 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.06
RPAP3Q9H6T3 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
RPAP3Q9H6T3 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
RPAP3Q9H6T3 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC21.64■■□□□ 1.05
RPAP3Q9H6T3 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
RPAP3Q9H6T3 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
RPAP3Q9H6T3 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
RPAP3Q9H6T3 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC21.64■■□□□ 1.05
RPAP3Q9H6T3 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC21.64■■□□□ 1.05
RPAP3Q9H6T3 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC21.64■■□□□ 1.05
RPAP3Q9H6T3 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
RPAP3Q9H6T3 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC21.64■■□□□ 1.05
RPAP3Q9H6T3 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC21.64■■□□□ 1.05
RPAP3Q9H6T3 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
RPAP3Q9H6T3 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
RPAP3Q9H6T3 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
RPAP3Q9H6T3 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
RPAP3Q9H6T3 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
RPAP3Q9H6T3 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
RPAP3Q9H6T3 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
RPAP3Q9H6T3 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
RPAP3Q9H6T3 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
RPAP3Q9H6T3 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
RPAP3Q9H6T3 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
RPAP3Q9H6T3 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
RPAP3Q9H6T3 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms