Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM4Q9C037 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC18.75■□□□□ 0.59
TRIM4Q9C037 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC18.75■□□□□ 0.59
TRIM4Q9C037 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM4Q9C037 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
TRIM4Q9C037 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC18.75■□□□□ 0.59
TRIM4Q9C037 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM4Q9C037 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC18.75■□□□□ 0.59
TRIM4Q9C037 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM4Q9C037 USF2-205ENST00000594064 1179 ntTSL 2 BASIC18.75■□□□□ 0.59
TRIM4Q9C037 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM4Q9C037 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
TRIM4Q9C037 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM4Q9C037 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM4Q9C037 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM4Q9C037 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC18.75■□□□□ 0.59
TRIM4Q9C037 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM4Q9C037 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM4Q9C037 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM4Q9C037 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM4Q9C037 POLI-202ENST00000406285 2030 ntTSL 2 BASIC18.74■□□□□ 0.59
TRIM4Q9C037 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
TRIM4Q9C037 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM4Q9C037 AL139384.1-201ENST00000612143 3047 ntBASIC18.74■□□□□ 0.59
TRIM4Q9C037 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM4Q9C037 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM4Q9C037 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC18.74■□□□□ 0.59
TRIM4Q9C037 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
TRIM4Q9C037 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC18.74■□□□□ 0.59
TRIM4Q9C037 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC18.74■□□□□ 0.59
TRIM4Q9C037 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC18.74■□□□□ 0.59
TRIM4Q9C037 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM4Q9C037 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM4Q9C037 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM4Q9C037 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM4Q9C037 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC18.74■□□□□ 0.59
TRIM4Q9C037 AC005521.1-201ENST00000393351 872 ntBASIC18.74■□□□□ 0.59
TRIM4Q9C037 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC18.74■□□□□ 0.59
TRIM4Q9C037 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC18.74■□□□□ 0.59
TRIM4Q9C037 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC18.74■□□□□ 0.59
TRIM4Q9C037 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
TRIM4Q9C037 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM4Q9C037 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC18.74■□□□□ 0.59
TRIM4Q9C037 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC18.74■□□□□ 0.59
TRIM4Q9C037 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
TRIM4Q9C037 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC18.74■□□□□ 0.59
TRIM4Q9C037 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC18.74■□□□□ 0.59
TRIM4Q9C037 AL031963.3-201ENST00000606441 850 ntBASIC18.74■□□□□ 0.59
TRIM4Q9C037 AC005363.2-201ENST00000618631 242 ntBASIC18.74■□□□□ 0.59
TRIM4Q9C037 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
TRIM4Q9C037 PKD1P1-201ENST00000458669 6805 ntBASIC18.74■□□□□ 0.59
TRIM4Q9C037 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC18.74■□□□□ 0.59
TRIM4Q9C037 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
TRIM4Q9C037 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC18.74■□□□□ 0.59
TRIM4Q9C037 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC18.74■□□□□ 0.59
TRIM4Q9C037 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC18.74■□□□□ 0.59
TRIM4Q9C037 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM4Q9C037 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM4Q9C037 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM4Q9C037 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC18.74■□□□□ 0.59
TRIM4Q9C037 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM4Q9C037 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
TRIM4Q9C037 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC18.73■□□□□ 0.59
TRIM4Q9C037 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC18.73■□□□□ 0.59
TRIM4Q9C037 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM4Q9C037 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC18.73■□□□□ 0.59
TRIM4Q9C037 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC18.73■□□□□ 0.59
TRIM4Q9C037 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC18.73■□□□□ 0.59
TRIM4Q9C037 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM4Q9C037 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
TRIM4Q9C037 AC009237.14-201ENST00000609975 1594 ntBASIC18.73■□□□□ 0.59
TRIM4Q9C037 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC18.73■□□□□ 0.59
TRIM4Q9C037 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM4Q9C037 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM4Q9C037 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC18.73■□□□□ 0.59
TRIM4Q9C037 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM4Q9C037 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
TRIM4Q9C037 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM4Q9C037 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM4Q9C037 MMP23A-201ENST00000234610 1017 ntBASIC18.73■□□□□ 0.59
TRIM4Q9C037 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM4Q9C037 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM4Q9C037 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM4Q9C037 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC18.73■□□□□ 0.59
TRIM4Q9C037 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC18.73■□□□□ 0.59
TRIM4Q9C037 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC18.73■□□□□ 0.59
TRIM4Q9C037 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC18.73■□□□□ 0.59
TRIM4Q9C037 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
TRIM4Q9C037 AC110285.5-201ENST00000611501 352 ntBASIC18.73■□□□□ 0.59
TRIM4Q9C037 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM4Q9C037 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM4Q9C037 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM4Q9C037 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC18.73■□□□□ 0.59
TRIM4Q9C037 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC18.73■□□□□ 0.59
TRIM4Q9C037 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM4Q9C037 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC18.73■□□□□ 0.59
TRIM4Q9C037 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM4Q9C037 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM4Q9C037 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM4Q9C037 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms