Protein–RNA interactions for Protein: Q9BT78

COPS4, COP9 signalosome complex subunit 4, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPS4Q9BT78 NME6-213ENST00000451657 871 ntTSL 2 BASIC17.27■□□□□ 0.36
COPS4Q9BT78 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC17.27■□□□□ 0.36
COPS4Q9BT78 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC17.27■□□□□ 0.36
COPS4Q9BT78 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COPS4Q9BT78 WT1-AS_3.1-201ENST00000613262 234 ntBASIC17.27■□□□□ 0.36
COPS4Q9BT78 AC083906.6-201ENST00000641366 219 ntBASIC17.27■□□□□ 0.36
COPS4Q9BT78 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC17.27■□□□□ 0.36
COPS4Q9BT78 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.27■□□□□ 0.36
COPS4Q9BT78 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
COPS4Q9BT78 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC17.27■□□□□ 0.35
COPS4Q9BT78 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
COPS4Q9BT78 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.27■□□□□ 0.35
COPS4Q9BT78 TFP1-202ENST00000475455 1573 ntBASIC17.27■□□□□ 0.35
COPS4Q9BT78 FEM1AP3-201ENST00000403722 1741 ntBASIC17.27■□□□□ 0.35
COPS4Q9BT78 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC17.27■□□□□ 0.35
COPS4Q9BT78 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
COPS4Q9BT78 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
COPS4Q9BT78 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
COPS4Q9BT78 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC17.26■□□□□ 0.35
COPS4Q9BT78 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC17.26■□□□□ 0.35
COPS4Q9BT78 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC17.26■□□□□ 0.35
COPS4Q9BT78 AC012313.1-201ENST00000593393 3059 ntBASIC17.26■□□□□ 0.35
COPS4Q9BT78 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COPS4Q9BT78 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC17.26■□□□□ 0.35
COPS4Q9BT78 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
COPS4Q9BT78 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COPS4Q9BT78 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.26■□□□□ 0.35
COPS4Q9BT78 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
COPS4Q9BT78 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
COPS4Q9BT78 CALM3-202ENST00000391918 702 ntTSL 2 BASIC17.26■□□□□ 0.35
COPS4Q9BT78 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
COPS4Q9BT78 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC17.26■□□□□ 0.35
COPS4Q9BT78 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
COPS4Q9BT78 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC17.26■□□□□ 0.35
COPS4Q9BT78 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
COPS4Q9BT78 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC17.26■□□□□ 0.35
COPS4Q9BT78 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC17.26■□□□□ 0.35
COPS4Q9BT78 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COPS4Q9BT78 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COPS4Q9BT78 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COPS4Q9BT78 AL162741.1-201ENST00000565563 1558 ntBASIC17.26■□□□□ 0.35
COPS4Q9BT78 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COPS4Q9BT78 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COPS4Q9BT78 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
COPS4Q9BT78 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC17.26■□□□□ 0.35
COPS4Q9BT78 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
COPS4Q9BT78 ANKRD18DP-204ENST00000455355 1975 ntBASIC17.26■□□□□ 0.35
COPS4Q9BT78 AC139713.2-201ENST00000641328 2723 ntBASIC17.26■□□□□ 0.35
COPS4Q9BT78 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC17.25■□□□□ 0.35
COPS4Q9BT78 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COPS4Q9BT78 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
COPS4Q9BT78 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
COPS4Q9BT78 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COPS4Q9BT78 COBL-210ENST00000632460 1941 ntTSL 5 BASIC17.25■□□□□ 0.35
COPS4Q9BT78 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC17.25■□□□□ 0.35
COPS4Q9BT78 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COPS4Q9BT78 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC17.25■□□□□ 0.35
COPS4Q9BT78 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
COPS4Q9BT78 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
COPS4Q9BT78 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC17.25■□□□□ 0.35
COPS4Q9BT78 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC17.25■□□□□ 0.35
COPS4Q9BT78 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
COPS4Q9BT78 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
COPS4Q9BT78 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
COPS4Q9BT78 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC17.25■□□□□ 0.35
COPS4Q9BT78 PPP1R14BP3-201ENST00000509033 445 ntBASIC17.25■□□□□ 0.35
COPS4Q9BT78 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COPS4Q9BT78 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC17.25■□□□□ 0.35
COPS4Q9BT78 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC17.25■□□□□ 0.35
COPS4Q9BT78 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC17.25■□□□□ 0.35
COPS4Q9BT78 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
COPS4Q9BT78 AC092118.2-201ENST00000613495 667 ntBASIC17.25■□□□□ 0.35
COPS4Q9BT78 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC17.25■□□□□ 0.35
COPS4Q9BT78 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
COPS4Q9BT78 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.25■□□□□ 0.35
COPS4Q9BT78 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
COPS4Q9BT78 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COPS4Q9BT78 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COPS4Q9BT78 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COPS4Q9BT78 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COPS4Q9BT78 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COPS4Q9BT78 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
COPS4Q9BT78 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
COPS4Q9BT78 PKD1P1-201ENST00000458669 6805 ntBASIC17.24■□□□□ 0.35
COPS4Q9BT78 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.24■□□□□ 0.35
COPS4Q9BT78 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COPS4Q9BT78 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COPS4Q9BT78 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
COPS4Q9BT78 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COPS4Q9BT78 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COPS4Q9BT78 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC17.24■□□□□ 0.35
COPS4Q9BT78 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COPS4Q9BT78 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COPS4Q9BT78 GGT1-206ENST00000404223 952 ntTSL 2 BASIC17.24■□□□□ 0.35
COPS4Q9BT78 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COPS4Q9BT78 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC17.24■□□□□ 0.35
COPS4Q9BT78 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COPS4Q9BT78 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COPS4Q9BT78 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC17.24■□□□□ 0.35
COPS4Q9BT78 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms