Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC20.33■□□□□ 0.85
CCDC42Q96M95 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CCDC42Q96M95 Six3os1_6.1-201ENST00000620790 196 ntBASIC20.33■□□□□ 0.85
CCDC42Q96M95 AC133041.1-202ENST00000642053 222 ntBASIC20.33■□□□□ 0.85
CCDC42Q96M95 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.85
CCDC42Q96M95 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC20.33■□□□□ 0.85
CCDC42Q96M95 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.84
CCDC42Q96M95 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC20.33■□□□□ 0.84
CCDC42Q96M95 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC20.32■□□□□ 0.84
CCDC42Q96M95 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC42Q96M95 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC20.32■□□□□ 0.84
CCDC42Q96M95 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC42Q96M95 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC42Q96M95 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
CCDC42Q96M95 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC42Q96M95 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC42Q96M95 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC42Q96M95 NOC2LP2-201ENST00000407594 1944 ntBASIC20.32■□□□□ 0.84
CCDC42Q96M95 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
CCDC42Q96M95 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC20.32■□□□□ 0.84
CCDC42Q96M95 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC42Q96M95 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC42Q96M95 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
CCDC42Q96M95 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC42Q96M95 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC42Q96M95 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
CCDC42Q96M95 POM121L13P-201ENST00000422362 380 ntBASIC20.32■□□□□ 0.84
CCDC42Q96M95 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC20.32■□□□□ 0.84
CCDC42Q96M95 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC20.32■□□□□ 0.84
CCDC42Q96M95 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC20.32■□□□□ 0.84
CCDC42Q96M95 C1QL1P1-201ENST00000568105 661 ntBASIC20.32■□□□□ 0.84
CCDC42Q96M95 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC42Q96M95 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC20.32■□□□□ 0.84
CCDC42Q96M95 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC20.32■□□□□ 0.84
CCDC42Q96M95 GAMT-205ENST00000640762 751 ntTSL 5 BASIC20.32■□□□□ 0.84
CCDC42Q96M95 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC42Q96M95 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC20.32■□□□□ 0.84
CCDC42Q96M95 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
CCDC42Q96M95 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC42Q96M95 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC42Q96M95 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC42Q96M95 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC42Q96M95 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC42Q96M95 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
CCDC42Q96M95 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC42Q96M95 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC20.31■□□□□ 0.84
CCDC42Q96M95 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC42Q96M95 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC42Q96M95 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC42Q96M95 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC42Q96M95 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC20.31■□□□□ 0.84
CCDC42Q96M95 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC20.31■□□□□ 0.84
CCDC42Q96M95 AC069152.1-201ENST00000438030 544 ntBASIC20.31■□□□□ 0.84
CCDC42Q96M95 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC20.31■□□□□ 0.84
CCDC42Q96M95 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC42Q96M95 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC20.31■□□□□ 0.84
CCDC42Q96M95 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC20.31■□□□□ 0.84
CCDC42Q96M95 AC004264.1-201ENST00000608354 794 ntBASIC20.31■□□□□ 0.84
CCDC42Q96M95 GXYLT1P5-201ENST00000614548 1189 ntBASIC20.31■□□□□ 0.84
CCDC42Q96M95 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC42Q96M95 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC42Q96M95 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC20.31■□□□□ 0.84
CCDC42Q96M95 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC42Q96M95 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC42Q96M95 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC42Q96M95 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC20.31■□□□□ 0.84
CCDC42Q96M95 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC20.31■□□□□ 0.84
CCDC42Q96M95 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC20.31■□□□□ 0.84
CCDC42Q96M95 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC42Q96M95 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC20.31■□□□□ 0.84
CCDC42Q96M95 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC42Q96M95 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC20.3■□□□□ 0.84
CCDC42Q96M95 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC42Q96M95 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC42Q96M95 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC20.3■□□□□ 0.84
CCDC42Q96M95 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
CCDC42Q96M95 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC20.3■□□□□ 0.84
CCDC42Q96M95 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC20.3■□□□□ 0.84
CCDC42Q96M95 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC20.3■□□□□ 0.84
CCDC42Q96M95 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC20.3■□□□□ 0.84
CCDC42Q96M95 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
CCDC42Q96M95 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC42Q96M95 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
CCDC42Q96M95 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC42Q96M95 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC20.3■□□□□ 0.84
CCDC42Q96M95 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC42Q96M95 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC42Q96M95 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC42Q96M95 HEIH-201ENST00000623091 1652 ntBASIC20.29■□□□□ 0.84
CCDC42Q96M95 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC20.29■□□□□ 0.84
CCDC42Q96M95 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC42Q96M95 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC20.29■□□□□ 0.84
CCDC42Q96M95 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
CCDC42Q96M95 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC20.29■□□□□ 0.84
CCDC42Q96M95 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC42Q96M95 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC42Q96M95 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC20.29■□□□□ 0.84
CCDC42Q96M95 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC20.29■□□□□ 0.84
CCDC42Q96M95 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
CCDC42Q96M95 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms