Protein–RNA interactions for Protein: Q96K76

USP47, Ubiquitin carboxyl-terminal hydrolase 47, humanhuman

Predictions only

Length 1,375 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP47Q96K76 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
USP47Q96K76 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
USP47Q96K76 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.8
USP47Q96K76 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC26.33■■□□□ 1.8
USP47Q96K76 YBX1P2-201ENST00000489612 999 ntBASIC26.33■■□□□ 1.8
USP47Q96K76 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC26.33■■□□□ 1.8
USP47Q96K76 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC26.33■■□□□ 1.8
USP47Q96K76 AC139887.4-201ENST00000607877 719 ntBASIC26.33■■□□□ 1.8
USP47Q96K76 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.8
USP47Q96K76 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
USP47Q96K76 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
USP47Q96K76 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC26.32■■□□□ 1.8
USP47Q96K76 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC26.32■■□□□ 1.8
USP47Q96K76 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC26.32■■□□□ 1.8
USP47Q96K76 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC26.32■■□□□ 1.8
USP47Q96K76 AL049597.2-201ENST00000565575 961 ntBASIC26.32■■□□□ 1.8
USP47Q96K76 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC26.32■■□□□ 1.8
USP47Q96K76 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC26.32■■□□□ 1.8
USP47Q96K76 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC26.31■■□□□ 1.8
USP47Q96K76 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
USP47Q96K76 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
USP47Q96K76 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
USP47Q96K76 ANKRD20A18P-201ENST00000359341 492 ntBASIC26.31■■□□□ 1.8
USP47Q96K76 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC26.31■■□□□ 1.8
USP47Q96K76 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC26.31■■□□□ 1.8
USP47Q96K76 AC104076.2-201ENST00000448912 469 ntBASIC26.31■■□□□ 1.8
USP47Q96K76 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
USP47Q96K76 AL441883.1-201ENST00000566170 1045 ntBASIC26.31■■□□□ 1.8
USP47Q96K76 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
USP47Q96K76 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
USP47Q96K76 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC26.3■■□□□ 1.8
USP47Q96K76 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC26.3■■□□□ 1.8
USP47Q96K76 AL031598.1-201ENST00000561511 1773 ntBASIC26.3■■□□□ 1.8
USP47Q96K76 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC26.3■■□□□ 1.8
USP47Q96K76 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC26.3■■□□□ 1.8
USP47Q96K76 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC26.3■■□□□ 1.8
USP47Q96K76 TNXA-203ENST00000507684 2038 ntBASIC26.3■■□□□ 1.8
USP47Q96K76 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
USP47Q96K76 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
USP47Q96K76 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC26.3■■□□□ 1.8
USP47Q96K76 BX664615.1-201ENST00000443558 458 ntBASIC26.3■■□□□ 1.8
USP47Q96K76 COX11P1-201ENST00000489116 835 ntBASIC26.3■■□□□ 1.8
USP47Q96K76 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC26.3■■□□□ 1.8
USP47Q96K76 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC26.3■■□□□ 1.8
USP47Q96K76 AL590326.2-201ENST00000625139 305 ntBASIC26.3■■□□□ 1.8
USP47Q96K76 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC26.3■■□□□ 1.8
USP47Q96K76 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
USP47Q96K76 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC26.3■■□□□ 1.8
USP47Q96K76 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC26.3■■□□□ 1.8
USP47Q96K76 COBL-210ENST00000632460 1941 ntTSL 5 BASIC26.29■■□□□ 1.8
USP47Q96K76 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
USP47Q96K76 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
USP47Q96K76 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
USP47Q96K76 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
USP47Q96K76 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC26.29■■□□□ 1.8
USP47Q96K76 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
USP47Q96K76 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
USP47Q96K76 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
USP47Q96K76 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC26.29■■□□□ 1.8
USP47Q96K76 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC26.29■■□□□ 1.8
USP47Q96K76 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
USP47Q96K76 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC26.29■■□□□ 1.8
USP47Q96K76 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC26.29■■□□□ 1.8
USP47Q96K76 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC26.29■■□□□ 1.8
USP47Q96K76 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC26.29■■□□□ 1.8
USP47Q96K76 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
USP47Q96K76 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC26.29■■□□□ 1.8
USP47Q96K76 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
USP47Q96K76 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
USP47Q96K76 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC26.29■■□□□ 1.8
USP47Q96K76 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
USP47Q96K76 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC26.29■■□□□ 1.8
USP47Q96K76 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
USP47Q96K76 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC26.28■■□□□ 1.8
USP47Q96K76 HOXB1-202ENST00000577092 1414 ntBASIC26.28■■□□□ 1.8
USP47Q96K76 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC26.28■■□□□ 1.8
USP47Q96K76 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
USP47Q96K76 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC26.28■■□□□ 1.8
USP47Q96K76 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
USP47Q96K76 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
USP47Q96K76 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
USP47Q96K76 SEC1P-202ENST00000473944 940 ntBASIC26.28■■□□□ 1.8
USP47Q96K76 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
USP47Q96K76 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC26.28■■□□□ 1.8
USP47Q96K76 ANO7L1-203ENST00000602586 1720 ntBASIC26.28■■□□□ 1.8
USP47Q96K76 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
USP47Q96K76 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
USP47Q96K76 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC26.27■■□□□ 1.8
USP47Q96K76 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
USP47Q96K76 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
USP47Q96K76 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
USP47Q96K76 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
USP47Q96K76 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
USP47Q96K76 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC26.27■■□□□ 1.8
USP47Q96K76 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC26.27■■□□□ 1.8
USP47Q96K76 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
USP47Q96K76 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
USP47Q96K76 DUX4L26-201ENST00000489078 1255 ntBASIC26.27■■□□□ 1.8
USP47Q96K76 KRT18P41-201ENST00000518924 1277 ntBASIC26.27■■□□□ 1.8
USP47Q96K76 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms