Protein–RNA interactions for Protein: Q96JG6

VPS50, Syndetin, humanhuman

Predictions only

Length 964 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50Q96JG6 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS50Q96JG6 NIFKP9-201ENST00000419265 221 ntBASIC18.41■□□□□ 0.54
VPS50Q96JG6 FAM197Y1-201ENST00000421178 764 ntBASIC18.41■□□□□ 0.54
VPS50Q96JG6 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC18.41■□□□□ 0.54
VPS50Q96JG6 FDX2-207ENST00000494368 584 ntTSL 4 BASIC18.41■□□□□ 0.54
VPS50Q96JG6 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC18.41■□□□□ 0.54
VPS50Q96JG6 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC18.41■□□□□ 0.54
VPS50Q96JG6 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC18.41■□□□□ 0.54
VPS50Q96JG6 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC18.41■□□□□ 0.54
VPS50Q96JG6 PHGDH-210ENST00000641115 1638 ntBASIC18.41■□□□□ 0.54
VPS50Q96JG6 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC18.41■□□□□ 0.54
VPS50Q96JG6 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS50Q96JG6 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
VPS50Q96JG6 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS50Q96JG6 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS50Q96JG6 KRT16P1-201ENST00000399124 1418 ntBASIC18.4■□□□□ 0.54
VPS50Q96JG6 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS50Q96JG6 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS50Q96JG6 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS50Q96JG6 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS50Q96JG6 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC18.4■□□□□ 0.54
VPS50Q96JG6 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
VPS50Q96JG6 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC18.4■□□□□ 0.54
VPS50Q96JG6 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC18.4■□□□□ 0.54
VPS50Q96JG6 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC18.4■□□□□ 0.54
VPS50Q96JG6 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
VPS50Q96JG6 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC18.4■□□□□ 0.54
VPS50Q96JG6 TUBB8P6-201ENST00000436895 1288 ntBASIC18.4■□□□□ 0.54
VPS50Q96JG6 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC18.4■□□□□ 0.54
VPS50Q96JG6 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC18.4■□□□□ 0.54
VPS50Q96JG6 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC18.4■□□□□ 0.54
VPS50Q96JG6 CROCCP3-202ENST00000420820 1947 ntBASIC18.4■□□□□ 0.54
VPS50Q96JG6 AC104581.1-202ENST00000635932 2618 ntBASIC18.4■□□□□ 0.54
VPS50Q96JG6 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS50Q96JG6 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS50Q96JG6 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
VPS50Q96JG6 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS50Q96JG6 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS50Q96JG6 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
VPS50Q96JG6 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS50Q96JG6 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS50Q96JG6 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC18.4■□□□□ 0.54
VPS50Q96JG6 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS50Q96JG6 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS50Q96JG6 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC18.4■□□□□ 0.54
VPS50Q96JG6 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS50Q96JG6 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
VPS50Q96JG6 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
VPS50Q96JG6 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
VPS50Q96JG6 HTR7P1-202ENST00000624664 4411 ntBASIC18.39■□□□□ 0.53
VPS50Q96JG6 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VPS50Q96JG6 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VPS50Q96JG6 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
VPS50Q96JG6 NUDT16P1-203ENST00000513809 620 ntBASIC18.39■□□□□ 0.53
VPS50Q96JG6 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC18.39■□□□□ 0.53
VPS50Q96JG6 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
VPS50Q96JG6 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
VPS50Q96JG6 GRAP-204ENST00000573099 846 ntTSL 3 BASIC18.39■□□□□ 0.53
VPS50Q96JG6 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VPS50Q96JG6 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
VPS50Q96JG6 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC18.39■□□□□ 0.53
VPS50Q96JG6 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC18.39■□□□□ 0.53
VPS50Q96JG6 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
VPS50Q96JG6 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC18.39■□□□□ 0.53
VPS50Q96JG6 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
VPS50Q96JG6 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC18.39■□□□□ 0.53
VPS50Q96JG6 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
VPS50Q96JG6 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC18.39■□□□□ 0.53
VPS50Q96JG6 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VPS50Q96JG6 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC18.39■□□□□ 0.53
VPS50Q96JG6 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
VPS50Q96JG6 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VPS50Q96JG6 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VPS50Q96JG6 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VPS50Q96JG6 TFP1-202ENST00000475455 1573 ntBASIC18.38■□□□□ 0.53
VPS50Q96JG6 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
VPS50Q96JG6 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC18.38■□□□□ 0.53
VPS50Q96JG6 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VPS50Q96JG6 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS50Q96JG6 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS50Q96JG6 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS50Q96JG6 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC18.38■□□□□ 0.53
VPS50Q96JG6 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC18.38■□□□□ 0.53
VPS50Q96JG6 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC18.38■□□□□ 0.53
VPS50Q96JG6 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC18.38■□□□□ 0.53
VPS50Q96JG6 UNC93B2-201ENST00000285383 730 ntBASIC18.38■□□□□ 0.53
VPS50Q96JG6 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS50Q96JG6 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC18.38■□□□□ 0.53
VPS50Q96JG6 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS50Q96JG6 AC211429.1-201ENST00000415277 523 ntBASIC18.38■□□□□ 0.53
VPS50Q96JG6 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS50Q96JG6 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS50Q96JG6 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC18.38■□□□□ 0.53
VPS50Q96JG6 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC18.38■□□□□ 0.53
VPS50Q96JG6 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC18.38■□□□□ 0.53
VPS50Q96JG6 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC18.38■□□□□ 0.53
VPS50Q96JG6 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC18.38■□□□□ 0.53
VPS50Q96JG6 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC18.38■□□□□ 0.53
VPS50Q96JG6 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VPS50Q96JG6 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms