Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 RAB24-205ENST00000471466 1642 ntTSL 525.21■■□□□ 1.635e-8■■■□□ 18.1
UPF1Q92900 MXD3-205ENST00000503473 2279 ntTSL 524.69■■□□□ 1.545e-8■■■□□ 18.1
UPF1Q92900 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC22.65■■□□□ 1.223e-7■■■□□ 18
UPF1Q92900 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC20.85■□□□□ 0.933e-7■■■□□ 18
UPF1Q92900 MAEA-215ENST00000512289 2426 ntTSL 219.6■□□□□ 0.733e-7■■■□□ 18
UPF1Q92900 MAEA-209ENST00000506530 5371 ntTSL 219.38■□□□□ 0.693e-7■■■□□ 18
UPF1Q92900 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.653e-7■■■□□ 18
UPF1Q92900 MAEA-204ENST00000503162 2069 ntTSL 218.55■□□□□ 0.563e-7■■■□□ 18
UPF1Q92900 MAEA-220ENST00000515766 3136 ntTSL 215.8■□□□□ 0.123e-7■■■□□ 18
UPF1Q92900 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC25.52■■□□□ 1.686e-8■■■□□ 18
UPF1Q92900 MED16-201ENST00000269814 1199 ntTSL 5 BASIC24.45■■□□□ 1.56e-8■■■□□ 18
UPF1Q92900 MED16-214ENST00000617672 554 ntTSL 5 BASIC23.22■■□□□ 1.316e-8■■■□□ 18
UPF1Q92900 MED16-215ENST00000621073 492 ntTSL 523.12■■□□□ 1.296e-8■■■□□ 18
UPF1Q92900 MED16-212ENST00000607471 2004 ntTSL 1 (best)17.35■□□□□ 0.376e-8■■■□□ 18
UPF1Q92900 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.226e-8■■■□□ 18
UPF1Q92900 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC15.56■□□□□ 0.086e-8■■■□□ 18
UPF1Q92900 MED16-210ENST00000606248 3181 ntTSL 1 (best)13.53□□□□□ -0.246e-8■■■□□ 18
UPF1Q92900 MED16-204ENST00000395808 3420 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.266e-8■■■□□ 18
UPF1Q92900 MED16-202ENST00000312090 3229 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.346e-8■■■□□ 18
UPF1Q92900 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.085e-8■■■□□ 18
UPF1Q92900 CLPX-201ENST00000300107 4695 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.42e-6■■■□□ 18
UPF1Q92900 TTC9C-204ENST00000532276 627 ntTSL 211.15□□□□□ -0.622e-6■■■□□ 18
UPF1Q92900 PIK3R2-202ENST00000426902 3273 ntTSL 216.53■□□□□ 0.245e-7■■■□□ 18
UPF1Q92900 ISG20L2-205ENST00000472824 3178 ntTSL 513.29□□□□□ -0.282e-6■■■□□ 18
UPF1Q92900 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC19.8■□□□□ 0.764e-7■■■□□ 18
UPF1Q92900 GALNT10-208ENST00000520647 4359 ntTSL 218.77■□□□□ 0.64e-7■■■□□ 18
UPF1Q92900 TGM2-204ENST00000468262 1862 ntTSL 1 (best)18.15■□□□□ 0.58e-8■■■□□ 18
UPF1Q92900 GALNT10-204ENST00000517958 3149 ntTSL 1 (best)11.38□□□□□ -0.594e-7■■■□□ 18
UPF1Q92900 NONO-211ENST00000473525 1430 ntTSL 511.98□□□□□ -0.491e-21■■■□□ 18
UPF1Q92900 SUMF2-212ENST00000447501 1249 ntTSL 219.94■□□□□ 0.783e-13■■■□□ 18
UPF1Q92900 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC32.28■■■□□ 2.761e-6■■■□□ 18
UPF1Q92900 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC21.23■□□□□ 0.993e-13■■■□□ 18
UPF1Q92900 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC14.52□□□□□ -0.083e-13■■■□□ 18
UPF1Q92900 ETF1-202ENST00000499810 3874 ntTSL 1 (best) BASIC13.38□□□□□ -0.272e-6■■■□□ 18
UPF1Q92900 ETF1-201ENST00000360541 3742 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.642e-6■■■□□ 18
UPF1Q92900 TMEM8A-208ENST00000476735 801 ntTSL 525.08■■□□□ 1.617e-8■■■□□ 18
UPF1Q92900 TMEM8A-203ENST00000427313 587 ntTSL 418.46■□□□□ 0.557e-8■■■□□ 18
UPF1Q92900 SAMD4B-204ENST00000596271 578 nt17.49■□□□□ 0.391e-8■■■□□ 18
UPF1Q92900 FAM114A1-201ENST00000358869 4050 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.024e-7■■■□□ 18
UPF1Q92900 PHF13-201ENST00000377648 3681 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.421e-7■■■□□ 18
UPF1Q92900 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC14.35□□□□□ -0.113e-9■■■□□ 18
UPF1Q92900 NFATC3-202ENST00000346183 6040 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.243e-9■■■□□ 18
UPF1Q92900 NFATC3-201ENST00000329524 6144 ntTSL 1 (best) BASIC6.89□□□□□ -1.313e-9■■■□□ 18
UPF1Q92900 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.33□□□□□ -1.721e-6■■■□□ 18
UPF1Q92900 PJA2-201ENST00000361189 4889 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.232e-10■■■□□ 17.9
UPF1Q92900 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC4.84□□□□□ -1.632e-10■■■□□ 17.9
UPF1Q92900 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC22.4■■□□□ 1.182e-20■■■□□ 17.9
UPF1Q92900 KHK-206ENST00000490823 1396 ntTSL 525.99■■□□□ 1.751e-11■■■□□ 17.9
UPF1Q92900 KHK-204ENST00000464371 1042 ntTSL 1 (best)22.84■■□□□ 1.251e-11■■■□□ 17.9
UPF1Q92900 STAT2-210ENST00000557235 3073 ntAPPRIS ALT2 TSL 2 BASIC11.41□□□□□ -0.584e-8■■■□□ 17.9
UPF1Q92900 UBE2Z-203ENST00000506271 864 ntTSL 210.78□□□□□ -0.686e-10■■■□□ 17.9
UPF1Q92900 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.191e-6■■■□□ 17.9
UPF1Q92900 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.593e-6■■■□□ 17.9
UPF1Q92900 LETMD1-202ENST00000380135 1566 ntTSL 322.28■■□□□ 1.162e-8■■■□□ 17.9
UPF1Q92900 LETMD1-210ENST00000547555 1658 ntTSL 520.81■□□□□ 0.922e-8■■■□□ 17.9
UPF1Q92900 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC19.33■□□□□ 0.682e-8■■■□□ 17.9
UPF1Q92900 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC18.98■□□□□ 0.632e-8■■■□□ 17.9
UPF1Q92900 LETMD1-212ENST00000547877 2020 ntTSL 518.83■□□□□ 0.612e-8■■■□□ 17.9
UPF1Q92900 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.542e-8■■■□□ 17.9
UPF1Q92900 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC18.43■□□□□ 0.542e-8■■■□□ 17.9
UPF1Q92900 LETMD1-209ENST00000547318 2001 ntTSL 1 (best)14.46□□□□□ -0.12e-8■■■□□ 17.9
UPF1Q92900 LETMD1-234ENST00000552645 1623 ntTSL 1 (best)13.27□□□□□ -0.292e-8■■■□□ 17.9
UPF1Q92900 LETMD1-238ENST00000623495 2948 nt9.28□□□□□ -0.922e-8■■■□□ 17.9
UPF1Q92900 CCDC69-205ENST00000521308 3323 ntTSL 1 (best)15.34■□□□□ 0.052e-7■■■□□ 17.9
UPF1Q92900 CCDC69-201ENST00000355417 3451 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.62e-7■■■□□ 17.9
UPF1Q92900 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.791e-6■■■□□ 17.9
UPF1Q92900 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.215e-7■■■□□ 17.9
UPF1Q92900 MCFD2-213ENST00000470873 552 ntTSL 423.9■■□□□ 1.421e-12■■■□□ 17.9
UPF1Q92900 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC30.86■■■□□ 2.533e-20■■■□□ 17.9
UPF1Q92900 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.273e-20■■■□□ 17.9
UPF1Q92900 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC27.82■■■□□ 2.043e-20■■■□□ 17.9
UPF1Q92900 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC22.96■■□□□ 1.273e-20■■■□□ 17.9
UPF1Q92900 TRAPPC3-205ENST00000462715 2428 ntTSL 214.17□□□□□ -0.143e-20■■■□□ 17.9
UPF1Q92900 TAPBP-234ENST00000434618 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.043e-7■■■□□ 17.9
UPF1Q92900 ID1-201ENST00000376105 1233 ntBASIC32.23■■■□□ 2.757e-28■■■□□ 17.9
UPF1Q92900 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.027e-28■■■□□ 17.9
UPF1Q92900 ST3GAL2-202ENST00000393640 8872 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.465e-8■■■□□ 17.9
UPF1Q92900 GUCD1-205ENST00000407973 773 ntTSL 332.69■■■□□ 2.821e-9■■■□□ 17.9
UPF1Q92900 GUCD1-208ENST00000468170 619 ntTSL 228.09■■■□□ 2.091e-9■■■□□ 17.9
UPF1Q92900 PIGS-201ENST00000268758 2397 ntTSL 215.1■□□□□ 0.011e-9■■■□□ 17.9
UPF1Q92900 GUCD1-210ENST00000490810 346 ntTSL 214.92□□□□□ -0.021e-9■■■□□ 17.9
UPF1Q92900 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC14.65□□□□□ -0.061e-9■■■□□ 17.9
UPF1Q92900 PIGS-206ENST00000487231 3088 ntTSL 1 (best)13.99□□□□□ -0.171e-9■■■□□ 17.9
UPF1Q92900 PIGS-202ENST00000308360 2877 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.371e-9■■■□□ 17.9
UPF1Q92900 PIGS-207ENST00000492429 2658 ntTSL 210.84□□□□□ -0.671e-9■■■□□ 17.9
UPF1Q92900 HMGCR-201ENST00000287936 4585 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.829e-14■■■□□ 17.9
UPF1Q92900 FBXL20-201ENST00000264658 10388 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.91e-9■■■□□ 17.9
UPF1Q92900 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC23.59■■□□□ 1.371e-8■■■□□ 17.9
UPF1Q92900 NDST1-204ENST00000519157 576 ntTSL 528.82■■■□□ 2.21e-8■■■□□ 17.9
UPF1Q92900 NDST1-206ENST00000522491 777 ntTSL 228.59■■■□□ 2.171e-8■■■□□ 17.9
UPF1Q92900 NDST1-202ENST00000518299 769 ntTSL 223.56■■□□□ 1.361e-8■■■□□ 17.9
UPF1Q92900 ZNF710-AS1-202ENST00000620791 2133 ntBASIC12.32□□□□□ -0.442e-7■■■□□ 17.9
UPF1Q92900 HMGCR-202ENST00000343975 3681 ntTSL 1 (best) BASIC10.23□□□□□ -0.779e-14■■■□□ 17.9
UPF1Q92900 NUDT21-201ENST00000300291 4436 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.842e-9■■■□□ 17.9
UPF1Q92900 MIR4751-201ENST00000578027 74 ntBASIC23.7■■□□□ 1.384e-15■■■□□ 17.9
UPF1Q92900 TTC19-206ENST00000475723 2591 ntTSL 220.7■□□□□ 0.92e-6■■■□□ 17.9
UPF1Q92900 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.452e-6■■■□□ 17.9
UPF1Q92900 TTC19-205ENST00000470649 760 ntAPPRIS ALT2 TSL 314.68□□□□□ -0.062e-6■■■□□ 17.9
UPF1Q92900 TTC19-207ENST00000481107 3075 ntTSL 28.16□□□□□ -1.12e-6■■■□□ 17.9
UPF1Q92900 TTC19-202ENST00000465567 2801 ntTSL 1 (best)5.89□□□□□ -1.472e-6■■■□□ 17.9
Retrieved 100 of 15,879 protein–RNA pairs in 204.9 ms