Protein–RNA interactions for Protein: Q8TCU4

ALMS1, Alstrom syndrome protein 1, humanhuman

Predictions only

Length 4,167 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1Q8TCU4 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC12.68□□□□□ -0.38
ALMS1Q8TCU4 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
ALMS1Q8TCU4 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
ALMS1Q8TCU4 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
ALMS1Q8TCU4 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC12.68□□□□□ -0.38
ALMS1Q8TCU4 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC12.68□□□□□ -0.38
ALMS1Q8TCU4 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC12.68□□□□□ -0.38
ALMS1Q8TCU4 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC12.68□□□□□ -0.38
ALMS1Q8TCU4 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
ALMS1Q8TCU4 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC12.68□□□□□ -0.38
ALMS1Q8TCU4 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
ALMS1Q8TCU4 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC12.68□□□□□ -0.38
ALMS1Q8TCU4 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC12.68□□□□□ -0.38
ALMS1Q8TCU4 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC12.68□□□□□ -0.38
ALMS1Q8TCU4 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
ALMS1Q8TCU4 AC012640.2-201ENST00000561606 901 ntBASIC12.67□□□□□ -0.38
ALMS1Q8TCU4 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
ALMS1Q8TCU4 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
ALMS1Q8TCU4 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
ALMS1Q8TCU4 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
ALMS1Q8TCU4 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC12.67□□□□□ -0.38
ALMS1Q8TCU4 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC12.67□□□□□ -0.38
ALMS1Q8TCU4 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
ALMS1Q8TCU4 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC12.67□□□□□ -0.38
ALMS1Q8TCU4 DHDH-204ENST00000523250 634 ntTSL 5 BASIC12.67□□□□□ -0.38
ALMS1Q8TCU4 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC12.67□□□□□ -0.38
ALMS1Q8TCU4 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC12.67□□□□□ -0.38
ALMS1Q8TCU4 GZMM-202ENST00000592501 941 ntTSL 3 BASIC12.67□□□□□ -0.38
ALMS1Q8TCU4 AP001269.4-201ENST00000609611 512 ntBASIC12.67□□□□□ -0.38
ALMS1Q8TCU4 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
ALMS1Q8TCU4 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
ALMS1Q8TCU4 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
ALMS1Q8TCU4 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC12.67□□□□□ -0.38
ALMS1Q8TCU4 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
ALMS1Q8TCU4 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
ALMS1Q8TCU4 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
ALMS1Q8TCU4 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
ALMS1Q8TCU4 AP006288.1-201ENST00000446065 395 ntBASIC12.67□□□□□ -0.38
ALMS1Q8TCU4 RN7SL606P-201ENST00000472779 293 ntBASIC12.67□□□□□ -0.38
ALMS1Q8TCU4 HOXB1-202ENST00000577092 1414 ntBASIC12.67□□□□□ -0.38
ALMS1Q8TCU4 LINC01711-201ENST00000598340 967 ntBASIC12.67□□□□□ -0.38
ALMS1Q8TCU4 AC025062.2-201ENST00000605477 670 ntBASIC12.67□□□□□ -0.38
ALMS1Q8TCU4 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
ALMS1Q8TCU4 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC12.67□□□□□ -0.38
ALMS1Q8TCU4 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
ALMS1Q8TCU4 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC12.67□□□□□ -0.38
ALMS1Q8TCU4 HNRNPA1P28-201ENST00000424481 961 ntBASIC12.66□□□□□ -0.38
ALMS1Q8TCU4 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC12.66□□□□□ -0.38
ALMS1Q8TCU4 HTR5BP-201ENST00000430851 1154 ntBASIC12.66□□□□□ -0.38
ALMS1Q8TCU4 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC12.66□□□□□ -0.38
ALMS1Q8TCU4 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC12.66□□□□□ -0.38
ALMS1Q8TCU4 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
ALMS1Q8TCU4 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
ALMS1Q8TCU4 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
ALMS1Q8TCU4 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC12.66□□□□□ -0.38
ALMS1Q8TCU4 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
ALMS1Q8TCU4 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC12.66□□□□□ -0.38
ALMS1Q8TCU4 LINC00565-201ENST00000562710 2331 ntBASIC12.66□□□□□ -0.38
ALMS1Q8TCU4 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
ALMS1Q8TCU4 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC12.66□□□□□ -0.38
ALMS1Q8TCU4 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC12.66□□□□□ -0.38
ALMS1Q8TCU4 RFPL4AP1-201ENST00000530883 850 ntBASIC12.66□□□□□ -0.38
ALMS1Q8TCU4 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
ALMS1Q8TCU4 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
ALMS1Q8TCU4 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC12.66□□□□□ -0.38
ALMS1Q8TCU4 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC12.66□□□□□ -0.38
ALMS1Q8TCU4 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC12.66□□□□□ -0.38
ALMS1Q8TCU4 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
ALMS1Q8TCU4 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC12.66□□□□□ -0.38
ALMS1Q8TCU4 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
ALMS1Q8TCU4 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC12.66□□□□□ -0.38
ALMS1Q8TCU4 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
ALMS1Q8TCU4 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
ALMS1Q8TCU4 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
ALMS1Q8TCU4 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
ALMS1Q8TCU4 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC12.66□□□□□ -0.38
ALMS1Q8TCU4 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC12.66□□□□□ -0.38
ALMS1Q8TCU4 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
ALMS1Q8TCU4 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC12.66□□□□□ -0.38
ALMS1Q8TCU4 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
ALMS1Q8TCU4 AC211486.1-202ENST00000416371 468 ntBASIC12.66□□□□□ -0.38
ALMS1Q8TCU4 KRT18P3-201ENST00000451602 1288 ntBASIC12.66□□□□□ -0.38
ALMS1Q8TCU4 AC211476.1-201ENST00000503899 468 ntBASIC12.66□□□□□ -0.38
ALMS1Q8TCU4 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC12.66□□□□□ -0.38
ALMS1Q8TCU4 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC12.65□□□□□ -0.38
ALMS1Q8TCU4 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
ALMS1Q8TCU4 AC007375.3-201ENST00000600936 2314 ntBASIC12.65□□□□□ -0.38
ALMS1Q8TCU4 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
ALMS1Q8TCU4 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC12.65□□□□□ -0.38
ALMS1Q8TCU4 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
ALMS1Q8TCU4 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC12.65□□□□□ -0.38
ALMS1Q8TCU4 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
ALMS1Q8TCU4 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
ALMS1Q8TCU4 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
ALMS1Q8TCU4 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
ALMS1Q8TCU4 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
ALMS1Q8TCU4 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
ALMS1Q8TCU4 RNA5SP415-201ENST00000517246 115 ntBASIC12.65□□□□□ -0.38
ALMS1Q8TCU4 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC12.65□□□□□ -0.38
ALMS1Q8TCU4 MIR3180-4-201ENST00000582223 153 ntBASIC12.65□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms