Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC18.39■□□□□ 0.53
VRK3Q8IV63 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VRK3Q8IV63 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC18.39■□□□□ 0.53
VRK3Q8IV63 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
VRK3Q8IV63 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
VRK3Q8IV63 LINC01568-207ENST00000641790 1380 ntBASIC18.39■□□□□ 0.53
VRK3Q8IV63 COBL-210ENST00000632460 1941 ntTSL 5 BASIC18.39■□□□□ 0.53
VRK3Q8IV63 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
VRK3Q8IV63 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC18.38■□□□□ 0.53
VRK3Q8IV63 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VRK3Q8IV63 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VRK3Q8IV63 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VRK3Q8IV63 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC18.38■□□□□ 0.53
VRK3Q8IV63 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VRK3Q8IV63 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VRK3Q8IV63 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC18.38■□□□□ 0.53
VRK3Q8IV63 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC18.38■□□□□ 0.53
VRK3Q8IV63 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC18.38■□□□□ 0.53
VRK3Q8IV63 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC18.38■□□□□ 0.53
VRK3Q8IV63 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC18.38■□□□□ 0.53
VRK3Q8IV63 FAM87A-204ENST00000613235 858 ntBASIC18.38■□□□□ 0.53
VRK3Q8IV63 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VRK3Q8IV63 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC18.38■□□□□ 0.53
VRK3Q8IV63 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VRK3Q8IV63 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
VRK3Q8IV63 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VRK3Q8IV63 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
VRK3Q8IV63 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VRK3Q8IV63 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC18.37■□□□□ 0.53
VRK3Q8IV63 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC18.37■□□□□ 0.53
VRK3Q8IV63 AL357033.4-201ENST00000617703 1807 ntBASIC18.37■□□□□ 0.53
VRK3Q8IV63 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VRK3Q8IV63 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
VRK3Q8IV63 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VRK3Q8IV63 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VRK3Q8IV63 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC18.37■□□□□ 0.53
VRK3Q8IV63 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VRK3Q8IV63 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC18.37■□□□□ 0.53
VRK3Q8IV63 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
VRK3Q8IV63 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC18.37■□□□□ 0.53
VRK3Q8IV63 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
VRK3Q8IV63 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VRK3Q8IV63 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VRK3Q8IV63 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC18.37■□□□□ 0.53
VRK3Q8IV63 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC18.37■□□□□ 0.53
VRK3Q8IV63 AC133561.5-201ENST00000635547 218 ntBASIC18.37■□□□□ 0.53
VRK3Q8IV63 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC18.37■□□□□ 0.53
VRK3Q8IV63 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
VRK3Q8IV63 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
VRK3Q8IV63 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
VRK3Q8IV63 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VRK3Q8IV63 AL109659.2-201ENST00000606809 1674 ntBASIC18.37■□□□□ 0.53
VRK3Q8IV63 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC18.37■□□□□ 0.53
VRK3Q8IV63 ANO7L1-203ENST00000602586 1720 ntBASIC18.37■□□□□ 0.53
VRK3Q8IV63 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC18.37■□□□□ 0.53
VRK3Q8IV63 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
VRK3Q8IV63 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VRK3Q8IV63 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC18.37■□□□□ 0.53
VRK3Q8IV63 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VRK3Q8IV63 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC18.37■□□□□ 0.53
VRK3Q8IV63 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VRK3Q8IV63 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC18.36■□□□□ 0.53
VRK3Q8IV63 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VRK3Q8IV63 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VRK3Q8IV63 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
VRK3Q8IV63 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
VRK3Q8IV63 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC18.36■□□□□ 0.53
VRK3Q8IV63 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
VRK3Q8IV63 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC18.36■□□□□ 0.53
VRK3Q8IV63 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VRK3Q8IV63 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
VRK3Q8IV63 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VRK3Q8IV63 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VRK3Q8IV63 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
VRK3Q8IV63 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VRK3Q8IV63 MCCD1P1-208ENST00000445732 328 ntBASIC18.36■□□□□ 0.53
VRK3Q8IV63 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
VRK3Q8IV63 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
VRK3Q8IV63 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
VRK3Q8IV63 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC18.36■□□□□ 0.53
VRK3Q8IV63 AL499627.1-201ENST00000569373 2188 ntBASIC18.36■□□□□ 0.53
VRK3Q8IV63 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
VRK3Q8IV63 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC18.36■□□□□ 0.53
VRK3Q8IV63 AC145285.6-201ENST00000604632 637 ntBASIC18.36■□□□□ 0.53
VRK3Q8IV63 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC18.36■□□□□ 0.53
VRK3Q8IV63 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC18.36■□□□□ 0.53
VRK3Q8IV63 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
VRK3Q8IV63 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VRK3Q8IV63 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
VRK3Q8IV63 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC18.35■□□□□ 0.53
VRK3Q8IV63 Z98044.1-201ENST00000632503 1764 ntBASIC18.35■□□□□ 0.53
VRK3Q8IV63 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC18.35■□□□□ 0.53
VRK3Q8IV63 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
VRK3Q8IV63 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VRK3Q8IV63 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VRK3Q8IV63 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VRK3Q8IV63 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC18.35■□□□□ 0.53
VRK3Q8IV63 TMA16-209ENST00000513272 803 ntTSL 2 BASIC18.35■□□□□ 0.53
VRK3Q8IV63 DUT-205ENST00000558813 769 ntTSL 2 BASIC18.35■□□□□ 0.53
VRK3Q8IV63 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms