Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
LINC00643Q86TS7 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
LINC00643Q86TS7 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC11.78□□□□□ -0.52
LINC00643Q86TS7 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
LINC00643Q86TS7 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
LINC00643Q86TS7 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC11.78□□□□□ -0.52
LINC00643Q86TS7 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC11.78□□□□□ -0.52
LINC00643Q86TS7 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC11.78□□□□□ -0.52
LINC00643Q86TS7 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
LINC00643Q86TS7 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
LINC00643Q86TS7 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC11.78□□□□□ -0.52
LINC00643Q86TS7 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
LINC00643Q86TS7 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
LINC00643Q86TS7 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
LINC00643Q86TS7 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC11.78□□□□□ -0.52
LINC00643Q86TS7 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
LINC00643Q86TS7 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
LINC00643Q86TS7 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
LINC00643Q86TS7 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC11.78□□□□□ -0.52
LINC00643Q86TS7 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC11.78□□□□□ -0.52
LINC00643Q86TS7 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
LINC00643Q86TS7 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
LINC00643Q86TS7 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
LINC00643Q86TS7 AGK-211ENST00000629555 2765 ntTSL 5 BASIC11.78□□□□□ -0.52
LINC00643Q86TS7 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
LINC00643Q86TS7 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC11.78□□□□□ -0.52
LINC00643Q86TS7 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
LINC00643Q86TS7 AC087393.1-201ENST00000582896 145 ntBASIC11.78□□□□□ -0.52
LINC00643Q86TS7 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC11.78□□□□□ -0.52
LINC00643Q86TS7 AC087239.1-201ENST00000622671 572 ntBASIC11.78□□□□□ -0.52
LINC00643Q86TS7 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC11.78□□□□□ -0.52
LINC00643Q86TS7 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
LINC00643Q86TS7 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
LINC00643Q86TS7 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
LINC00643Q86TS7 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC11.78□□□□□ -0.52
LINC00643Q86TS7 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
LINC00643Q86TS7 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC11.78□□□□□ -0.52
LINC00643Q86TS7 AF131216.4-201ENST00000638924 1588 ntBASIC11.78□□□□□ -0.52
LINC00643Q86TS7 PCDHB17P-201ENST00000539533 2393 ntBASIC11.78□□□□□ -0.52
LINC00643Q86TS7 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC11.78□□□□□ -0.52
LINC00643Q86TS7 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC11.78□□□□□ -0.52
LINC00643Q86TS7 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC11.78□□□□□ -0.52
LINC00643Q86TS7 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
LINC00643Q86TS7 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
LINC00643Q86TS7 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
LINC00643Q86TS7 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
LINC00643Q86TS7 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
LINC00643Q86TS7 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC11.78□□□□□ -0.52
LINC00643Q86TS7 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC11.77□□□□□ -0.52
LINC00643Q86TS7 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.52
LINC00643Q86TS7 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC11.77□□□□□ -0.52
LINC00643Q86TS7 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC11.77□□□□□ -0.52
LINC00643Q86TS7 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
LINC00643Q86TS7 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
LINC00643Q86TS7 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC11.77□□□□□ -0.53
LINC00643Q86TS7 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
LINC00643Q86TS7 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
LINC00643Q86TS7 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
LINC00643Q86TS7 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC11.77□□□□□ -0.53
LINC00643Q86TS7 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
LINC00643Q86TS7 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
LINC00643Q86TS7 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC11.77□□□□□ -0.53
LINC00643Q86TS7 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC11.77□□□□□ -0.53
LINC00643Q86TS7 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC11.77□□□□□ -0.53
LINC00643Q86TS7 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC11.77□□□□□ -0.53
LINC00643Q86TS7 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
LINC00643Q86TS7 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
LINC00643Q86TS7 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC11.77□□□□□ -0.53
LINC00643Q86TS7 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
LINC00643Q86TS7 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC11.77□□□□□ -0.53
LINC00643Q86TS7 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
LINC00643Q86TS7 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
LINC00643Q86TS7 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
LINC00643Q86TS7 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC11.77□□□□□ -0.53
LINC00643Q86TS7 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
LINC00643Q86TS7 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC11.77□□□□□ -0.53
LINC00643Q86TS7 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
LINC00643Q86TS7 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
LINC00643Q86TS7 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
LINC00643Q86TS7 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
LINC00643Q86TS7 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC11.76□□□□□ -0.53
LINC00643Q86TS7 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
LINC00643Q86TS7 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC11.76□□□□□ -0.53
LINC00643Q86TS7 AC126755.1-201ENST00000525846 6405 ntBASIC11.76□□□□□ -0.53
LINC00643Q86TS7 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
LINC00643Q86TS7 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
LINC00643Q86TS7 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
LINC00643Q86TS7 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
LINC00643Q86TS7 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC11.76□□□□□ -0.53
LINC00643Q86TS7 C1R-202ENST00000536053 2347 ntTSL 2 BASIC11.76□□□□□ -0.53
LINC00643Q86TS7 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
LINC00643Q86TS7 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
LINC00643Q86TS7 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
LINC00643Q86TS7 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
LINC00643Q86TS7 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC11.76□□□□□ -0.53
LINC00643Q86TS7 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
LINC00643Q86TS7 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC11.76□□□□□ -0.53
LINC00643Q86TS7 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
LINC00643Q86TS7 TEX21P-204ENST00000641479 1693 ntBASIC11.76□□□□□ -0.53
LINC00643Q86TS7 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms