Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CCDC88AQ3V6T2 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC23.02■■□□□ 1.28
CCDC88AQ3V6T2 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC23.02■■□□□ 1.28
CCDC88AQ3V6T2 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC23.02■■□□□ 1.28
CCDC88AQ3V6T2 AC091607.1-201ENST00000490318 1060 ntBASIC23.02■■□□□ 1.28
CCDC88AQ3V6T2 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
CCDC88AQ3V6T2 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC23.02■■□□□ 1.28
CCDC88AQ3V6T2 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CCDC88AQ3V6T2 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CCDC88AQ3V6T2 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC23.01■■□□□ 1.27
CCDC88AQ3V6T2 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CCDC88AQ3V6T2 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC23.01■■□□□ 1.27
CCDC88AQ3V6T2 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC23.01■■□□□ 1.27
CCDC88AQ3V6T2 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC23.01■■□□□ 1.27
CCDC88AQ3V6T2 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CCDC88AQ3V6T2 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
CCDC88AQ3V6T2 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC23.01■■□□□ 1.27
CCDC88AQ3V6T2 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC23.01■■□□□ 1.27
CCDC88AQ3V6T2 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CCDC88AQ3V6T2 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC23.01■■□□□ 1.27
CCDC88AQ3V6T2 COX10-202ENST00000429152 875 ntTSL 2 BASIC23.01■■□□□ 1.27
CCDC88AQ3V6T2 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC23.01■■□□□ 1.27
CCDC88AQ3V6T2 PPIE-208ENST00000470213 927 ntTSL 3 BASIC23.01■■□□□ 1.27
CCDC88AQ3V6T2 Z69720.1-201ENST00000601483 472 ntBASIC23.01■■□□□ 1.27
CCDC88AQ3V6T2 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
CCDC88AQ3V6T2 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CCDC88AQ3V6T2 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CCDC88AQ3V6T2 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC23.01■■□□□ 1.27
CCDC88AQ3V6T2 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
CCDC88AQ3V6T2 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CCDC88AQ3V6T2 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CCDC88AQ3V6T2 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC23.01■■□□□ 1.27
CCDC88AQ3V6T2 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC23■■□□□ 1.27
CCDC88AQ3V6T2 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
CCDC88AQ3V6T2 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC23■■□□□ 1.27
CCDC88AQ3V6T2 SDHAP1-207ENST00000440850 2000 ntBASIC23■■□□□ 1.27
CCDC88AQ3V6T2 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC23■■□□□ 1.27
CCDC88AQ3V6T2 CDV3-207ENST00000508481 661 ntTSL 3 BASIC23■■□□□ 1.27
CCDC88AQ3V6T2 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
CCDC88AQ3V6T2 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC23■■□□□ 1.27
CCDC88AQ3V6T2 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC23■■□□□ 1.27
CCDC88AQ3V6T2 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC23■■□□□ 1.27
CCDC88AQ3V6T2 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC23■■□□□ 1.27
CCDC88AQ3V6T2 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC23■■□□□ 1.27
CCDC88AQ3V6T2 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
CCDC88AQ3V6T2 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
CCDC88AQ3V6T2 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC23■■□□□ 1.27
CCDC88AQ3V6T2 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC23■■□□□ 1.27
CCDC88AQ3V6T2 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC23■■□□□ 1.27
CCDC88AQ3V6T2 LSM5-204ENST00000409909 740 ntTSL 2 BASIC23■■□□□ 1.27
CCDC88AQ3V6T2 IGHV3-47-201ENST00000425060 335 ntBASIC23■■□□□ 1.27
CCDC88AQ3V6T2 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC23■■□□□ 1.27
CCDC88AQ3V6T2 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC23■■□□□ 1.27
CCDC88AQ3V6T2 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC23■■□□□ 1.27
CCDC88AQ3V6T2 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC23■■□□□ 1.27
CCDC88AQ3V6T2 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC23■■□□□ 1.27
CCDC88AQ3V6T2 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC23■■□□□ 1.27
CCDC88AQ3V6T2 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
CCDC88AQ3V6T2 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC23■■□□□ 1.27
CCDC88AQ3V6T2 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC23■■□□□ 1.27
CCDC88AQ3V6T2 Z83836.1-201ENST00000624605 1642 ntBASIC23■■□□□ 1.27
CCDC88AQ3V6T2 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC22.99■■□□□ 1.27
CCDC88AQ3V6T2 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
CCDC88AQ3V6T2 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
CCDC88AQ3V6T2 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
CCDC88AQ3V6T2 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
CCDC88AQ3V6T2 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC22.99■■□□□ 1.27
CCDC88AQ3V6T2 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC22.99■■□□□ 1.27
CCDC88AQ3V6T2 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
CCDC88AQ3V6T2 NSUN5P1-202ENST00000421140 1535 ntBASIC22.99■■□□□ 1.27
CCDC88AQ3V6T2 NSUN5P2-203ENST00000457352 1529 ntBASIC22.99■■□□□ 1.27
CCDC88AQ3V6T2 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
CCDC88AQ3V6T2 NUS1P2-201ENST00000417358 873 ntBASIC22.99■■□□□ 1.27
CCDC88AQ3V6T2 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
CCDC88AQ3V6T2 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC22.99■■□□□ 1.27
CCDC88AQ3V6T2 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC22.99■■□□□ 1.27
CCDC88AQ3V6T2 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
CCDC88AQ3V6T2 AC148477.8-201ENST00000624298 468 ntBASIC22.99■■□□□ 1.27
CCDC88AQ3V6T2 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC22.99■■□□□ 1.27
CCDC88AQ3V6T2 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC22.99■■□□□ 1.27
CCDC88AQ3V6T2 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC22.99■■□□□ 1.27
CCDC88AQ3V6T2 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
CCDC88AQ3V6T2 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC22.99■■□□□ 1.27
CCDC88AQ3V6T2 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC22.99■■□□□ 1.27
CCDC88AQ3V6T2 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
CCDC88AQ3V6T2 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CCDC88AQ3V6T2 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC22.98■■□□□ 1.27
CCDC88AQ3V6T2 BAALC-202ENST00000306391 243 ntTSL 5 BASIC22.98■■□□□ 1.27
CCDC88AQ3V6T2 BAALC-204ENST00000330955 222 ntTSL 5 BASIC22.98■■□□□ 1.27
CCDC88AQ3V6T2 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CCDC88AQ3V6T2 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CCDC88AQ3V6T2 RPL18-209ENST00000550645 463 ntTSL 5 BASIC22.98■■□□□ 1.27
CCDC88AQ3V6T2 RPL18-214ENST00000552588 559 ntTSL 3 BASIC22.98■■□□□ 1.27
CCDC88AQ3V6T2 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC22.98■■□□□ 1.27
CCDC88AQ3V6T2 AC010327.4-202ENST00000591484 748 ntBASIC22.98■■□□□ 1.27
CCDC88AQ3V6T2 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC22.98■■□□□ 1.27
CCDC88AQ3V6T2 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC22.98■■□□□ 1.27
CCDC88AQ3V6T2 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC22.98■■□□□ 1.27
CCDC88AQ3V6T2 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC22.98■■□□□ 1.27
CCDC88AQ3V6T2 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC22.98■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms