Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
HDAC4P56524 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
HDAC4P56524 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HDAC4P56524 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
HDAC4P56524 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HDAC4P56524 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
HDAC4P56524 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
HDAC4P56524 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC19.67■□□□□ 0.74
HDAC4P56524 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC19.67■□□□□ 0.74
HDAC4P56524 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
HDAC4P56524 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
HDAC4P56524 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
HDAC4P56524 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
HDAC4P56524 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC19.66■□□□□ 0.74
HDAC4P56524 AL031598.1-201ENST00000561511 1773 ntBASIC19.66■□□□□ 0.74
HDAC4P56524 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HDAC4P56524 CYGB-204ENST00000589342 815 ntTSL 3 BASIC19.66■□□□□ 0.74
HDAC4P56524 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
HDAC4P56524 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
HDAC4P56524 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HDAC4P56524 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HDAC4P56524 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
HDAC4P56524 KRT8P32-201ENST00000512863 1461 ntBASIC19.66■□□□□ 0.74
HDAC4P56524 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC19.66■□□□□ 0.74
HDAC4P56524 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HDAC4P56524 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
HDAC4P56524 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
HDAC4P56524 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
HDAC4P56524 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC19.65■□□□□ 0.74
HDAC4P56524 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HDAC4P56524 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HDAC4P56524 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HDAC4P56524 AC008622.2-201ENST00000617006 1229 ntBASIC19.65■□□□□ 0.74
HDAC4P56524 AC068587.9-201ENST00000641814 219 ntBASIC19.65■□□□□ 0.74
HDAC4P56524 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HDAC4P56524 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
HDAC4P56524 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
HDAC4P56524 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HDAC4P56524 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
HDAC4P56524 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
HDAC4P56524 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HDAC4P56524 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
HDAC4P56524 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
HDAC4P56524 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
HDAC4P56524 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
HDAC4P56524 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.74
HDAC4P56524 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
HDAC4P56524 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC19.64■□□□□ 0.74
HDAC4P56524 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HDAC4P56524 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HDAC4P56524 MIR1238-201ENST00000408483 83 ntBASIC19.64■□□□□ 0.73
HDAC4P56524 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC19.64■□□□□ 0.73
HDAC4P56524 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HDAC4P56524 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC19.64■□□□□ 0.73
HDAC4P56524 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
HDAC4P56524 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HDAC4P56524 HEIH-201ENST00000623091 1652 ntBASIC19.64■□□□□ 0.73
HDAC4P56524 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
HDAC4P56524 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
HDAC4P56524 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HDAC4P56524 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC19.64■□□□□ 0.73
HDAC4P56524 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HDAC4P56524 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HDAC4P56524 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HDAC4P56524 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HDAC4P56524 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC19.63■□□□□ 0.73
HDAC4P56524 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC19.63■□□□□ 0.73
HDAC4P56524 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC19.63■□□□□ 0.73
HDAC4P56524 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HDAC4P56524 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HDAC4P56524 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
HDAC4P56524 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HDAC4P56524 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
HDAC4P56524 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HDAC4P56524 CA15P1-201ENST00000481698 905 ntBASIC19.63■□□□□ 0.73
HDAC4P56524 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HDAC4P56524 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HDAC4P56524 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HDAC4P56524 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
HDAC4P56524 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC19.63■□□□□ 0.73
HDAC4P56524 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HDAC4P56524 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC19.63■□□□□ 0.73
HDAC4P56524 AC120498.9-201ENST00000339021 3867 ntBASIC19.62■□□□□ 0.73
HDAC4P56524 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC19.62■□□□□ 0.73
HDAC4P56524 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC19.62■□□□□ 0.73
HDAC4P56524 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HDAC4P56524 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
HDAC4P56524 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HDAC4P56524 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HDAC4P56524 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC19.62■□□□□ 0.73
HDAC4P56524 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HDAC4P56524 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC19.62■□□□□ 0.73
HDAC4P56524 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
HDAC4P56524 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HDAC4P56524 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
HDAC4P56524 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HDAC4P56524 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HDAC4P56524 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HDAC4P56524 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HDAC4P56524 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms