Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC18.59■□□□□ 0.57
LIMK1P53667 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC18.59■□□□□ 0.57
LIMK1P53667 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
LIMK1P53667 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIMK1P53667 AC007225.1-201ENST00000566331 1836 ntBASIC18.59■□□□□ 0.57
LIMK1P53667 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIMK1P53667 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIMK1P53667 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIMK1P53667 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LIMK1P53667 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC18.59■□□□□ 0.57
LIMK1P53667 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC18.59■□□□□ 0.57
LIMK1P53667 LINC00265-3P-201ENST00000447588 903 ntBASIC18.59■□□□□ 0.57
LIMK1P53667 TPM1-218ENST00000559281 851 ntTSL 5 BASIC18.59■□□□□ 0.57
LIMK1P53667 NAA38-203ENST00000575071 553 ntTSL 2 BASIC18.59■□□□□ 0.57
LIMK1P53667 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC18.59■□□□□ 0.57
LIMK1P53667 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LIMK1P53667 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
LIMK1P53667 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
LIMK1P53667 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
LIMK1P53667 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
LIMK1P53667 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC18.58■□□□□ 0.57
LIMK1P53667 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
LIMK1P53667 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
LIMK1P53667 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
LIMK1P53667 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
LIMK1P53667 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC18.58■□□□□ 0.56
LIMK1P53667 MIR574-201ENST00000385209 96 ntBASIC18.58■□□□□ 0.56
LIMK1P53667 TSPY22P-201ENST00000427496 604 ntBASIC18.58■□□□□ 0.56
LIMK1P53667 AC092183.1-201ENST00000469884 875 ntBASIC18.58■□□□□ 0.56
LIMK1P53667 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC18.58■□□□□ 0.56
LIMK1P53667 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC18.58■□□□□ 0.56
LIMK1P53667 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
LIMK1P53667 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC18.58■□□□□ 0.56
LIMK1P53667 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC18.58■□□□□ 0.56
LIMK1P53667 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
LIMK1P53667 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LIMK1P53667 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
LIMK1P53667 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
LIMK1P53667 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC18.58■□□□□ 0.56
LIMK1P53667 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
LIMK1P53667 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LIMK1P53667 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC18.58■□□□□ 0.56
LIMK1P53667 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC18.58■□□□□ 0.56
LIMK1P53667 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
LIMK1P53667 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
LIMK1P53667 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
LIMK1P53667 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
LIMK1P53667 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC18.58■□□□□ 0.56
LIMK1P53667 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LIMK1P53667 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC18.58■□□□□ 0.56
LIMK1P53667 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
LIMK1P53667 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC18.57■□□□□ 0.56
LIMK1P53667 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIMK1P53667 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC18.57■□□□□ 0.56
LIMK1P53667 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIMK1P53667 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIMK1P53667 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIMK1P53667 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC18.57■□□□□ 0.56
LIMK1P53667 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC18.57■□□□□ 0.56
LIMK1P53667 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
LIMK1P53667 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC18.57■□□□□ 0.56
LIMK1P53667 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
LIMK1P53667 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
LIMK1P53667 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC18.57■□□□□ 0.56
LIMK1P53667 HLA-F-220ENST00000434407 884 ntBASIC18.57■□□□□ 0.56
LIMK1P53667 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC18.57■□□□□ 0.56
LIMK1P53667 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC18.57■□□□□ 0.56
LIMK1P53667 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC18.57■□□□□ 0.56
LIMK1P53667 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC18.57■□□□□ 0.56
LIMK1P53667 NME4-212ENST00000621774 904 ntTSL 3 BASIC18.57■□□□□ 0.56
LIMK1P53667 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIMK1P53667 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
LIMK1P53667 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIMK1P53667 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIMK1P53667 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIMK1P53667 CD37-204ENST00000535669 1674 ntTSL 2 BASIC18.57■□□□□ 0.56
LIMK1P53667 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
LIMK1P53667 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIMK1P53667 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC18.56■□□□□ 0.56
LIMK1P53667 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
LIMK1P53667 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIMK1P53667 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC18.56■□□□□ 0.56
LIMK1P53667 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIMK1P53667 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC18.56■□□□□ 0.56
LIMK1P53667 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC18.56■□□□□ 0.56
LIMK1P53667 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
LIMK1P53667 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIMK1P53667 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
LIMK1P53667 FAM220CP-201ENST00000395253 831 ntBASIC18.56■□□□□ 0.56
LIMK1P53667 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC18.56■□□□□ 0.56
LIMK1P53667 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
LIMK1P53667 AC064862.7-201ENST00000604520 867 ntBASIC18.56■□□□□ 0.56
LIMK1P53667 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC18.56■□□□□ 0.56
LIMK1P53667 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
LIMK1P53667 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
LIMK1P53667 BID-203ENST00000399765 1879 ntTSL 2 BASIC18.56■□□□□ 0.56
LIMK1P53667 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
LIMK1P53667 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
LIMK1P53667 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIMK1P53667 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms