Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CTCFP49711 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CTCFP49711 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
CTCFP49711 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
CTCFP49711 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CTCFP49711 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CTCFP49711 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CTCFP49711 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
CTCFP49711 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CTCFP49711 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CTCFP49711 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CTCFP49711 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CTCFP49711 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
CTCFP49711 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CTCFP49711 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CTCFP49711 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC21.77■■□□□ 1.08
CTCFP49711 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CTCFP49711 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
CTCFP49711 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC21.77■■□□□ 1.08
CTCFP49711 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CTCFP49711 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
CTCFP49711 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CTCFP49711 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC21.77■■□□□ 1.08
CTCFP49711 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC21.77■■□□□ 1.08
CTCFP49711 AC211486.1-202ENST00000416371 468 ntBASIC21.77■■□□□ 1.08
CTCFP49711 AP006288.1-201ENST00000446065 395 ntBASIC21.77■■□□□ 1.08
CTCFP49711 AP003733.1-201ENST00000491725 852 ntBASIC21.77■■□□□ 1.08
CTCFP49711 AC211476.1-201ENST00000503899 468 ntBASIC21.77■■□□□ 1.08
CTCFP49711 IGHV3-22-201ENST00000520721 359 ntBASIC21.77■■□□□ 1.08
CTCFP49711 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC21.77■■□□□ 1.08
CTCFP49711 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CTCFP49711 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC21.77■■□□□ 1.08
CTCFP49711 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC21.77■■□□□ 1.08
CTCFP49711 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC21.77■■□□□ 1.08
CTCFP49711 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CTCFP49711 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
CTCFP49711 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CTCFP49711 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
CTCFP49711 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC21.77■■□□□ 1.08
CTCFP49711 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.07
CTCFP49711 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.07
CTCFP49711 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
CTCFP49711 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CTCFP49711 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CTCFP49711 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC21.76■■□□□ 1.07
CTCFP49711 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC21.76■■□□□ 1.07
CTCFP49711 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CTCFP49711 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC21.76■■□□□ 1.07
CTCFP49711 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC21.76■■□□□ 1.07
CTCFP49711 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CTCFP49711 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CTCFP49711 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC21.76■■□□□ 1.07
CTCFP49711 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC21.76■■□□□ 1.07
CTCFP49711 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC21.76■■□□□ 1.07
CTCFP49711 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC21.76■■□□□ 1.07
CTCFP49711 AL592071.1-201ENST00000611956 408 ntBASIC21.76■■□□□ 1.07
CTCFP49711 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CTCFP49711 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
CTCFP49711 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC21.75■■□□□ 1.07
CTCFP49711 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC21.75■■□□□ 1.07
CTCFP49711 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC21.75■■□□□ 1.07
CTCFP49711 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
CTCFP49711 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
CTCFP49711 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC21.75■■□□□ 1.07
CTCFP49711 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CTCFP49711 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
CTCFP49711 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
CTCFP49711 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CTCFP49711 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CTCFP49711 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CTCFP49711 PARN-205ENST00000539279 1557 ntTSL 2 BASIC21.75■■□□□ 1.07
CTCFP49711 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
CTCFP49711 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
CTCFP49711 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CTCFP49711 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
CTCFP49711 MIR770-201ENST00000390219 98 ntBASIC21.75■■□□□ 1.07
CTCFP49711 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC21.75■■□□□ 1.07
CTCFP49711 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC21.75■■□□□ 1.07
CTCFP49711 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CTCFP49711 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC21.75■■□□□ 1.07
CTCFP49711 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC21.75■■□□□ 1.07
CTCFP49711 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC21.75■■□□□ 1.07
CTCFP49711 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC21.75■■□□□ 1.07
CTCFP49711 AL596442.2-201ENST00000610240 980 ntBASIC21.75■■□□□ 1.07
CTCFP49711 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC21.75■■□□□ 1.07
CTCFP49711 AC124864.1-201ENST00000623408 392 ntBASIC21.75■■□□□ 1.07
CTCFP49711 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CTCFP49711 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CTCFP49711 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
CTCFP49711 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC21.75■■□□□ 1.07
CTCFP49711 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC21.75■■□□□ 1.07
CTCFP49711 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
CTCFP49711 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CTCFP49711 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
CTCFP49711 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CTCFP49711 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC21.74■■□□□ 1.07
CTCFP49711 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CTCFP49711 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CTCFP49711 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
CTCFP49711 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms