Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
NKX2-1P43699 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
NKX2-1P43699 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
NKX2-1P43699 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC15.42■□□□□ 0.06
NKX2-1P43699 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
NKX2-1P43699 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC15.42■□□□□ 0.06
NKX2-1P43699 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
NKX2-1P43699 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
NKX2-1P43699 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC15.42■□□□□ 0.06
NKX2-1P43699 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
NKX2-1P43699 AL390719.1-204ENST00000412397 1219 ntBASIC15.42■□□□□ 0.06
NKX2-1P43699 AC026271.2-201ENST00000428091 497 ntBASIC15.42■□□□□ 0.06
NKX2-1P43699 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC15.42■□□□□ 0.06
NKX2-1P43699 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
NKX2-1P43699 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC15.42■□□□□ 0.06
NKX2-1P43699 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
NKX2-1P43699 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC15.42■□□□□ 0.06
NKX2-1P43699 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC15.42■□□□□ 0.06
NKX2-1P43699 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
NKX2-1P43699 AC010980.2-201ENST00000587099 1412 ntBASIC15.42■□□□□ 0.06
NKX2-1P43699 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
NKX2-1P43699 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
NKX2-1P43699 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
NKX2-1P43699 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
NKX2-1P43699 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC15.41■□□□□ 0.06
NKX2-1P43699 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
NKX2-1P43699 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC15.41■□□□□ 0.06
NKX2-1P43699 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
NKX2-1P43699 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC15.41■□□□□ 0.06
NKX2-1P43699 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
NKX2-1P43699 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
NKX2-1P43699 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
NKX2-1P43699 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC15.41■□□□□ 0.06
NKX2-1P43699 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC15.41■□□□□ 0.06
NKX2-1P43699 STX7-201ENST00000367937 1090 ntTSL 5 BASIC15.41■□□□□ 0.06
NKX2-1P43699 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC15.41■□□□□ 0.06
NKX2-1P43699 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
NKX2-1P43699 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
NKX2-1P43699 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
NKX2-1P43699 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
NKX2-1P43699 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC15.41■□□□□ 0.06
NKX2-1P43699 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
NKX2-1P43699 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC15.41■□□□□ 0.06
NKX2-1P43699 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC15.41■□□□□ 0.06
NKX2-1P43699 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
NKX2-1P43699 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC15.41■□□□□ 0.06
NKX2-1P43699 MIR5787-201ENST00000611784 55 ntBASIC15.41■□□□□ 0.06
NKX2-1P43699 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC15.41■□□□□ 0.06
NKX2-1P43699 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
NKX2-1P43699 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
NKX2-1P43699 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
NKX2-1P43699 KRT17P1-201ENST00000399211 1546 ntBASIC15.41■□□□□ 0.06
NKX2-1P43699 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC15.41■□□□□ 0.06
NKX2-1P43699 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
NKX2-1P43699 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
NKX2-1P43699 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
NKX2-1P43699 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC15.41■□□□□ 0.06
NKX2-1P43699 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC15.41■□□□□ 0.06
NKX2-1P43699 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
NKX2-1P43699 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
NKX2-1P43699 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC15.41■□□□□ 0.06
NKX2-1P43699 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
NKX2-1P43699 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
NKX2-1P43699 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC15.41■□□□□ 0.06
NKX2-1P43699 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
NKX2-1P43699 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
NKX2-1P43699 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
NKX2-1P43699 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
NKX2-1P43699 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
NKX2-1P43699 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
NKX2-1P43699 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
NKX2-1P43699 GPX1P1-201ENST00000388829 606 ntBASIC15.4■□□□□ 0.06
NKX2-1P43699 GXYLT1P2-201ENST00000433312 1230 ntBASIC15.4■□□□□ 0.06
NKX2-1P43699 KRT18P5-201ENST00000436075 1291 ntBASIC15.4■□□□□ 0.06
NKX2-1P43699 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC15.4■□□□□ 0.06
NKX2-1P43699 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
NKX2-1P43699 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC15.4■□□□□ 0.06
NKX2-1P43699 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC15.4■□□□□ 0.06
NKX2-1P43699 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC15.4■□□□□ 0.06
NKX2-1P43699 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC15.4■□□□□ 0.06
NKX2-1P43699 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
NKX2-1P43699 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC15.4■□□□□ 0.06
NKX2-1P43699 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
NKX2-1P43699 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
NKX2-1P43699 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
NKX2-1P43699 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
NKX2-1P43699 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
NKX2-1P43699 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC15.4■□□□□ 0.06
NKX2-1P43699 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
NKX2-1P43699 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
NKX2-1P43699 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC15.4■□□□□ 0.06
NKX2-1P43699 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
NKX2-1P43699 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
NKX2-1P43699 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC15.4■□□□□ 0.06
NKX2-1P43699 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
NKX2-1P43699 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC15.4■□□□□ 0.06
NKX2-1P43699 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
NKX2-1P43699 ESPNP-201ENST00000270691 2015 ntBASIC15.39■□□□□ 0.05
NKX2-1P43699 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
NKX2-1P43699 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms