Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC17.22■□□□□ 0.35
RFC3P40938 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RFC3P40938 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
RFC3P40938 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
RFC3P40938 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
RFC3P40938 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC17.22■□□□□ 0.35
RFC3P40938 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
RFC3P40938 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
RFC3P40938 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
RFC3P40938 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC17.22■□□□□ 0.35
RFC3P40938 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RFC3P40938 GAS2L1P1-201ENST00000420145 1480 ntBASIC17.22■□□□□ 0.35
RFC3P40938 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
RFC3P40938 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RFC3P40938 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
RFC3P40938 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
RFC3P40938 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
RFC3P40938 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RFC3P40938 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
RFC3P40938 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RFC3P40938 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC17.21■□□□□ 0.35
RFC3P40938 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
RFC3P40938 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
RFC3P40938 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC17.21■□□□□ 0.35
RFC3P40938 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
RFC3P40938 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
RFC3P40938 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RFC3P40938 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RFC3P40938 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
RFC3P40938 GPAT2P1-201ENST00000444924 1672 ntBASIC17.21■□□□□ 0.35
RFC3P40938 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RFC3P40938 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RFC3P40938 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
RFC3P40938 AL031133.1-201ENST00000406807 723 ntBASIC17.21■□□□□ 0.35
RFC3P40938 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
RFC3P40938 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC17.21■□□□□ 0.35
RFC3P40938 PHB2-202ENST00000440277 996 ntTSL 5 BASIC17.21■□□□□ 0.35
RFC3P40938 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC17.21■□□□□ 0.35
RFC3P40938 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC17.21■□□□□ 0.35
RFC3P40938 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC17.21■□□□□ 0.35
RFC3P40938 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC17.21■□□□□ 0.35
RFC3P40938 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC17.21■□□□□ 0.35
RFC3P40938 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC17.21■□□□□ 0.35
RFC3P40938 CBFB-203ENST00000561924 584 ntTSL 5 BASIC17.21■□□□□ 0.35
RFC3P40938 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
RFC3P40938 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC17.21■□□□□ 0.35
RFC3P40938 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC17.21■□□□□ 0.35
RFC3P40938 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC17.21■□□□□ 0.35
RFC3P40938 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC17.21■□□□□ 0.35
RFC3P40938 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RFC3P40938 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RFC3P40938 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
RFC3P40938 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RFC3P40938 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
RFC3P40938 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
RFC3P40938 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
RFC3P40938 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
RFC3P40938 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC17.2■□□□□ 0.34
RFC3P40938 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
RFC3P40938 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RFC3P40938 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
RFC3P40938 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC17.2■□□□□ 0.34
RFC3P40938 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
RFC3P40938 KRT18P38-201ENST00000449496 1282 ntBASIC17.2■□□□□ 0.34
RFC3P40938 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
RFC3P40938 CR769767.2-201ENST00000622735 460 ntBASIC17.2■□□□□ 0.34
RFC3P40938 MYC-208ENST00000641036 567 ntBASIC17.2■□□□□ 0.34
RFC3P40938 AL031432.5-201ENST00000641059 760 ntBASIC17.2■□□□□ 0.34
RFC3P40938 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
RFC3P40938 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC17.2■□□□□ 0.34
RFC3P40938 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
RFC3P40938 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC17.2■□□□□ 0.34
RFC3P40938 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RFC3P40938 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RFC3P40938 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RFC3P40938 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
RFC3P40938 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
RFC3P40938 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC17.19■□□□□ 0.34
RFC3P40938 AC036111.1-201ENST00000533973 1582 ntBASIC17.19■□□□□ 0.34
RFC3P40938 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
RFC3P40938 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
RFC3P40938 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
RFC3P40938 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC17.19■□□□□ 0.34
RFC3P40938 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
RFC3P40938 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
RFC3P40938 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RFC3P40938 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
RFC3P40938 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RFC3P40938 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
RFC3P40938 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC17.19■□□□□ 0.34
RFC3P40938 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC17.19■□□□□ 0.34
RFC3P40938 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC17.19■□□□□ 0.34
RFC3P40938 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC17.19■□□□□ 0.34
RFC3P40938 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC17.19■□□□□ 0.34
RFC3P40938 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
RFC3P40938 CD320-202ENST00000537716 1119 ntTSL 2 BASIC17.19■□□□□ 0.34
RFC3P40938 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
RFC3P40938 GCSHP2-201ENST00000560971 527 ntBASIC17.19■□□□□ 0.34
RFC3P40938 CLN6-204ENST00000564752 900 ntTSL 3 BASIC17.19■□□□□ 0.34
RFC3P40938 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms