Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
SMARCA1P28370 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
SMARCA1P28370 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC21.61■■□□□ 1.05
SMARCA1P28370 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC21.6■■□□□ 1.05
SMARCA1P28370 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
SMARCA1P28370 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SMARCA1P28370 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SMARCA1P28370 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
SMARCA1P28370 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SMARCA1P28370 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
SMARCA1P28370 ANKRD20A18P-201ENST00000359341 492 ntBASIC21.6■■□□□ 1.05
SMARCA1P28370 TSPY5P-201ENST00000426936 936 ntBASIC21.6■■□□□ 1.05
SMARCA1P28370 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
SMARCA1P28370 ETFA-216ENST00000560726 942 ntTSL 3 BASIC21.6■■□□□ 1.05
SMARCA1P28370 AC112497.1-201ENST00000624824 639 ntBASIC21.6■■□□□ 1.05
SMARCA1P28370 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
SMARCA1P28370 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC21.6■■□□□ 1.05
SMARCA1P28370 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC21.6■■□□□ 1.05
SMARCA1P28370 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC21.6■■□□□ 1.05
SMARCA1P28370 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
SMARCA1P28370 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC21.6■■□□□ 1.05
SMARCA1P28370 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SMARCA1P28370 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
SMARCA1P28370 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SMARCA1P28370 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
SMARCA1P28370 AK4P3-201ENST00000418260 669 ntBASIC21.59■■□□□ 1.05
SMARCA1P28370 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
SMARCA1P28370 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC21.59■■□□□ 1.05
SMARCA1P28370 DUX4L26-201ENST00000489078 1255 ntBASIC21.59■■□□□ 1.05
SMARCA1P28370 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC21.59■■□□□ 1.05
SMARCA1P28370 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC21.59■■□□□ 1.05
SMARCA1P28370 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SMARCA1P28370 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SMARCA1P28370 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC21.59■■□□□ 1.05
SMARCA1P28370 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC21.59■■□□□ 1.05
SMARCA1P28370 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC21.59■■□□□ 1.05
SMARCA1P28370 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SMARCA1P28370 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC21.59■■□□□ 1.05
SMARCA1P28370 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
SMARCA1P28370 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SMARCA1P28370 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
SMARCA1P28370 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC21.58■■□□□ 1.05
SMARCA1P28370 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC21.58■■□□□ 1.05
SMARCA1P28370 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
SMARCA1P28370 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC21.58■■□□□ 1.05
SMARCA1P28370 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC21.58■■□□□ 1.05
SMARCA1P28370 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SMARCA1P28370 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
SMARCA1P28370 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SMARCA1P28370 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC21.58■■□□□ 1.05
SMARCA1P28370 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC21.58■■□□□ 1.05
SMARCA1P28370 AC063952.2-201ENST00000498792 1227 ntBASIC21.58■■□□□ 1.05
SMARCA1P28370 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC21.58■■□□□ 1.05
SMARCA1P28370 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
SMARCA1P28370 AC104390.1-201ENST00000555663 520 ntBASIC21.58■■□□□ 1.05
SMARCA1P28370 AL441883.1-201ENST00000566170 1045 ntBASIC21.58■■□□□ 1.05
SMARCA1P28370 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC21.58■■□□□ 1.05
SMARCA1P28370 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC21.58■■□□□ 1.05
SMARCA1P28370 MIR3180-4-201ENST00000582223 153 ntBASIC21.58■■□□□ 1.05
SMARCA1P28370 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC21.58■■□□□ 1.05
SMARCA1P28370 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC21.58■■□□□ 1.05
SMARCA1P28370 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SMARCA1P28370 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.05
SMARCA1P28370 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.04
SMARCA1P28370 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
SMARCA1P28370 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.04
SMARCA1P28370 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
SMARCA1P28370 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.04
SMARCA1P28370 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
SMARCA1P28370 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
SMARCA1P28370 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC21.58■■□□□ 1.04
SMARCA1P28370 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC21.57■■□□□ 1.04
SMARCA1P28370 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
SMARCA1P28370 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
SMARCA1P28370 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SMARCA1P28370 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
SMARCA1P28370 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
SMARCA1P28370 SNAI3-AS1-205ENST00000568633 2096 ntBASIC21.57■■□□□ 1.04
SMARCA1P28370 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC21.57■■□□□ 1.04
SMARCA1P28370 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC21.57■■□□□ 1.04
SMARCA1P28370 COBL-210ENST00000632460 1941 ntTSL 5 BASIC21.57■■□□□ 1.04
SMARCA1P28370 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC21.57■■□□□ 1.04
SMARCA1P28370 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SMARCA1P28370 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SMARCA1P28370 AP000593.1-201ENST00000393668 712 ntBASIC21.57■■□□□ 1.04
SMARCA1P28370 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC21.57■■□□□ 1.04
SMARCA1P28370 SEC1P-202ENST00000473944 940 ntBASIC21.57■■□□□ 1.04
SMARCA1P28370 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC21.57■■□□□ 1.04
SMARCA1P28370 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC21.57■■□□□ 1.04
SMARCA1P28370 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
SMARCA1P28370 CD81-212ENST00000526072 1172 ntTSL 5 BASIC21.57■■□□□ 1.04
SMARCA1P28370 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC21.57■■□□□ 1.04
SMARCA1P28370 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC21.57■■□□□ 1.04
SMARCA1P28370 AL023973.1-201ENST00000624619 620 ntBASIC21.57■■□□□ 1.04
SMARCA1P28370 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SMARCA1P28370 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC21.57■■□□□ 1.04
SMARCA1P28370 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
SMARCA1P28370 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SMARCA1P28370 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
SMARCA1P28370 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC21.57■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 63.7 ms