Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL6A2P12110 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
COL6A2P12110 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
COL6A2P12110 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL6A2P12110 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL6A2P12110 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL6A2P12110 KRT8P11-201ENST00000409686 1436 ntBASIC18.61■□□□□ 0.57
COL6A2P12110 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC18.61■□□□□ 0.57
COL6A2P12110 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC18.61■□□□□ 0.57
COL6A2P12110 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL6A2P12110 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC18.61■□□□□ 0.57
COL6A2P12110 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC18.61■□□□□ 0.57
COL6A2P12110 AC131212.4-201ENST00000623606 975 ntBASIC18.61■□□□□ 0.57
COL6A2P12110 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL6A2P12110 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL6A2P12110 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL6A2P12110 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL6A2P12110 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL6A2P12110 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL6A2P12110 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC18.6■□□□□ 0.57
COL6A2P12110 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
COL6A2P12110 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL6A2P12110 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
COL6A2P12110 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
COL6A2P12110 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL6A2P12110 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
COL6A2P12110 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC18.6■□□□□ 0.57
COL6A2P12110 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
COL6A2P12110 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
COL6A2P12110 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC18.6■□□□□ 0.57
COL6A2P12110 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC18.6■□□□□ 0.57
COL6A2P12110 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL6A2P12110 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL6A2P12110 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC18.6■□□□□ 0.57
COL6A2P12110 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL6A2P12110 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC18.6■□□□□ 0.57
COL6A2P12110 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
COL6A2P12110 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC18.6■□□□□ 0.57
COL6A2P12110 KLF13-207ENST00000560473 489 ntTSL 3 BASIC18.6■□□□□ 0.57
COL6A2P12110 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL6A2P12110 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
COL6A2P12110 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL6A2P12110 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC18.6■□□□□ 0.57
COL6A2P12110 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL6A2P12110 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
COL6A2P12110 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL6A2P12110 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL6A2P12110 NOC2LP2-201ENST00000407594 1944 ntBASIC18.6■□□□□ 0.57
COL6A2P12110 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL6A2P12110 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL6A2P12110 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL6A2P12110 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC18.6■□□□□ 0.57
COL6A2P12110 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
COL6A2P12110 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL6A2P12110 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL6A2P12110 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL6A2P12110 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC18.59■□□□□ 0.57
COL6A2P12110 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
COL6A2P12110 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL6A2P12110 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC18.59■□□□□ 0.57
COL6A2P12110 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL6A2P12110 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL6A2P12110 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC18.59■□□□□ 0.57
COL6A2P12110 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC18.59■□□□□ 0.57
COL6A2P12110 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC18.59■□□□□ 0.57
COL6A2P12110 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
COL6A2P12110 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC18.59■□□□□ 0.57
COL6A2P12110 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL6A2P12110 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC18.59■□□□□ 0.57
COL6A2P12110 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC18.59■□□□□ 0.57
COL6A2P12110 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
COL6A2P12110 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
COL6A2P12110 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC18.59■□□□□ 0.57
COL6A2P12110 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL6A2P12110 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC18.59■□□□□ 0.57
COL6A2P12110 AL355802.2-201ENST00000402069 882 ntBASIC18.59■□□□□ 0.57
COL6A2P12110 KRASP1-201ENST00000407852 552 ntBASIC18.59■□□□□ 0.57
COL6A2P12110 AC239809.2-201ENST00000415381 517 ntBASIC18.59■□□□□ 0.57
COL6A2P12110 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
COL6A2P12110 AC133681.1-201ENST00000465482 601 ntBASIC18.59■□□□□ 0.57
COL6A2P12110 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
COL6A2P12110 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC18.59■□□□□ 0.57
COL6A2P12110 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC18.59■□□□□ 0.57
COL6A2P12110 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC18.59■□□□□ 0.57
COL6A2P12110 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC18.59■□□□□ 0.57
COL6A2P12110 AL023875.1-201ENST00000640777 796 ntBASIC18.59■□□□□ 0.57
COL6A2P12110 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL6A2P12110 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL6A2P12110 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL6A2P12110 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL6A2P12110 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
COL6A2P12110 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC18.59■□□□□ 0.57
COL6A2P12110 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
COL6A2P12110 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
COL6A2P12110 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC18.59■□□□□ 0.57
COL6A2P12110 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC18.59■□□□□ 0.57
COL6A2P12110 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC18.59■□□□□ 0.57
COL6A2P12110 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL6A2P12110 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
COL6A2P12110 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms