Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
VIMP08670 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
VIMP08670 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC18.92■□□□□ 0.62
VIMP08670 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VIMP08670 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
VIMP08670 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
VIMP08670 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VIMP08670 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VIMP08670 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VIMP08670 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VIMP08670 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VIMP08670 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
VIMP08670 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
VIMP08670 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC18.91■□□□□ 0.62
VIMP08670 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
VIMP08670 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC18.91■□□□□ 0.62
VIMP08670 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
VIMP08670 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
VIMP08670 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC18.91■□□□□ 0.62
VIMP08670 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
VIMP08670 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
VIMP08670 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
VIMP08670 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC18.91■□□□□ 0.62
VIMP08670 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
VIMP08670 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC18.91■□□□□ 0.62
VIMP08670 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC18.91■□□□□ 0.62
VIMP08670 AC010536.3-201ENST00000620306 533 ntBASIC18.91■□□□□ 0.62
VIMP08670 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VIMP08670 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VIMP08670 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC18.91■□□□□ 0.62
VIMP08670 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC18.91■□□□□ 0.62
VIMP08670 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
VIMP08670 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VIMP08670 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC18.91■□□□□ 0.62
VIMP08670 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
VIMP08670 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC18.91■□□□□ 0.62
VIMP08670 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VIMP08670 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VIMP08670 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC18.91■□□□□ 0.62
VIMP08670 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VIMP08670 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VIMP08670 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC18.9■□□□□ 0.62
VIMP08670 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VIMP08670 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
VIMP08670 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.62
VIMP08670 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VIMP08670 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC18.9■□□□□ 0.62
VIMP08670 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
VIMP08670 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VIMP08670 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VIMP08670 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VIMP08670 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
VIMP08670 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
VIMP08670 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VIMP08670 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VIMP08670 AC005837.3-201ENST00000612163 286 ntBASIC18.9■□□□□ 0.62
VIMP08670 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
VIMP08670 PCDHA12-202ENST00000613593 2588 ntBASIC18.9■□□□□ 0.62
VIMP08670 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
VIMP08670 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VIMP08670 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
VIMP08670 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
VIMP08670 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
VIMP08670 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC18.9■□□□□ 0.62
VIMP08670 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC18.9■□□□□ 0.62
VIMP08670 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
VIMP08670 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
VIMP08670 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
VIMP08670 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
VIMP08670 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
VIMP08670 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC18.89■□□□□ 0.62
VIMP08670 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
VIMP08670 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC18.89■□□□□ 0.62
VIMP08670 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
VIMP08670 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
VIMP08670 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.62
VIMP08670 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
VIMP08670 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.62
VIMP08670 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
VIMP08670 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
VIMP08670 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
VIMP08670 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
VIMP08670 KRT19P1-201ENST00000405746 1186 ntBASIC18.89■□□□□ 0.61
VIMP08670 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
VIMP08670 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC18.89■□□□□ 0.61
VIMP08670 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
VIMP08670 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
VIMP08670 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
VIMP08670 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VIMP08670 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VIMP08670 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
VIMP08670 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VIMP08670 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VIMP08670 CEP83-AS1-201ENST00000623122 2482 ntBASIC18.89■□□□□ 0.61
VIMP08670 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
VIMP08670 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC18.88■□□□□ 0.61
VIMP08670 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
VIMP08670 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC18.88■□□□□ 0.61
VIMP08670 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VIMP08670 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms