Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC21.83■■□□□ 1.09
CTDNEP1O95476 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC21.83■■□□□ 1.09
CTDNEP1O95476 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CTDNEP1O95476 GPAT2P1-201ENST00000444924 1672 ntBASIC21.83■■□□□ 1.09
CTDNEP1O95476 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
CTDNEP1O95476 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC21.83■■□□□ 1.09
CTDNEP1O95476 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
CTDNEP1O95476 DECR2-212ENST00000627716 352 ntTSL 2 BASIC21.83■■□□□ 1.09
CTDNEP1O95476 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
CTDNEP1O95476 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.09
CTDNEP1O95476 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.08
CTDNEP1O95476 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC21.83■■□□□ 1.08
CTDNEP1O95476 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC21.83■■□□□ 1.08
CTDNEP1O95476 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.08
CTDNEP1O95476 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
CTDNEP1O95476 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC21.83■■□□□ 1.08
CTDNEP1O95476 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
CTDNEP1O95476 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC21.83■■□□□ 1.08
CTDNEP1O95476 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CTDNEP1O95476 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC21.82■■□□□ 1.08
CTDNEP1O95476 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
CTDNEP1O95476 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC21.82■■□□□ 1.08
CTDNEP1O95476 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CTDNEP1O95476 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC21.82■■□□□ 1.08
CTDNEP1O95476 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
CTDNEP1O95476 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CTDNEP1O95476 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CTDNEP1O95476 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC21.82■■□□□ 1.08
CTDNEP1O95476 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC21.82■■□□□ 1.08
CTDNEP1O95476 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CTDNEP1O95476 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
CTDNEP1O95476 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CTDNEP1O95476 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC21.82■■□□□ 1.08
CTDNEP1O95476 CRYGFP-201ENST00000418459 633 ntBASIC21.82■■□□□ 1.08
CTDNEP1O95476 TSPY15P-201ENST00000457163 923 ntBASIC21.82■■□□□ 1.08
CTDNEP1O95476 MIR4674-201ENST00000582457 87 ntBASIC21.82■■□□□ 1.08
CTDNEP1O95476 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC21.82■■□□□ 1.08
CTDNEP1O95476 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CTDNEP1O95476 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC21.82■■□□□ 1.08
CTDNEP1O95476 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
CTDNEP1O95476 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CTDNEP1O95476 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC21.82■■□□□ 1.08
CTDNEP1O95476 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC21.82■■□□□ 1.08
CTDNEP1O95476 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CTDNEP1O95476 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CTDNEP1O95476 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
CTDNEP1O95476 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
CTDNEP1O95476 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC21.82■■□□□ 1.08
CTDNEP1O95476 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC21.81■■□□□ 1.08
CTDNEP1O95476 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CTDNEP1O95476 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC21.81■■□□□ 1.08
CTDNEP1O95476 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
CTDNEP1O95476 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CTDNEP1O95476 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CTDNEP1O95476 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
CTDNEP1O95476 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CTDNEP1O95476 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
CTDNEP1O95476 AL023284.2-201ENST00000405850 579 ntBASIC21.81■■□□□ 1.08
CTDNEP1O95476 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
CTDNEP1O95476 SNORA78-201ENST00000459373 127 ntBASIC21.81■■□□□ 1.08
CTDNEP1O95476 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC21.81■■□□□ 1.08
CTDNEP1O95476 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC21.81■■□□□ 1.08
CTDNEP1O95476 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC21.81■■□□□ 1.08
CTDNEP1O95476 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
CTDNEP1O95476 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC21.81■■□□□ 1.08
CTDNEP1O95476 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC21.81■■□□□ 1.08
CTDNEP1O95476 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CTDNEP1O95476 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CTDNEP1O95476 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
CTDNEP1O95476 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CTDNEP1O95476 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CTDNEP1O95476 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CTDNEP1O95476 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC21.81■■□□□ 1.08
CTDNEP1O95476 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CTDNEP1O95476 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CTDNEP1O95476 AC073592.3-201ENST00000625118 1834 ntBASIC21.8■■□□□ 1.08
CTDNEP1O95476 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CTDNEP1O95476 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CTDNEP1O95476 BICD1-207ENST00000551848 1962 ntBASIC21.8■■□□□ 1.08
CTDNEP1O95476 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
CTDNEP1O95476 AL109659.2-201ENST00000606809 1674 ntBASIC21.8■■□□□ 1.08
CTDNEP1O95476 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CTDNEP1O95476 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CTDNEP1O95476 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC21.8■■□□□ 1.08
CTDNEP1O95476 AP005242.2-201ENST00000580065 1175 ntBASIC21.8■■□□□ 1.08
CTDNEP1O95476 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC21.8■■□□□ 1.08
CTDNEP1O95476 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC21.8■■□□□ 1.08
CTDNEP1O95476 AC135050.7-201ENST00000624508 2218 ntBASIC21.8■■□□□ 1.08
CTDNEP1O95476 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
CTDNEP1O95476 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
CTDNEP1O95476 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CTDNEP1O95476 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC21.8■■□□□ 1.08
CTDNEP1O95476 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
CTDNEP1O95476 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
CTDNEP1O95476 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
CTDNEP1O95476 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CTDNEP1O95476 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CTDNEP1O95476 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CTDNEP1O95476 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC21.79■■□□□ 1.08
CTDNEP1O95476 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms