Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
USH2AO75445 GAPDHP21-201ENST00000450301 1010 ntBASIC8.39□□□□□ -1.07
USH2AO75445 PON3-205ENST00000451904 1053 ntTSL 3 BASIC8.39□□□□□ -1.07
USH2AO75445 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC8.39□□□□□ -1.07
USH2AO75445 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC8.39□□□□□ -1.07
USH2AO75445 AC002347.1-201ENST00000569543 541 ntBASIC8.39□□□□□ -1.07
USH2AO75445 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC8.39□□□□□ -1.07
USH2AO75445 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC8.39□□□□□ -1.07
USH2AO75445 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC8.39□□□□□ -1.07
USH2AO75445 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC8.39□□□□□ -1.07
USH2AO75445 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC8.39□□□□□ -1.07
USH2AO75445 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
USH2AO75445 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC8.39□□□□□ -1.07
USH2AO75445 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC8.39□□□□□ -1.07
USH2AO75445 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
USH2AO75445 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC8.39□□□□□ -1.07
USH2AO75445 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
USH2AO75445 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
USH2AO75445 MED16-201ENST00000269814 1199 ntTSL 5 BASIC8.39□□□□□ -1.07
USH2AO75445 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
USH2AO75445 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
USH2AO75445 AC092474.2-201ENST00000424288 719 ntBASIC8.39□□□□□ -1.07
USH2AO75445 AC004832.2-201ENST00000426397 482 ntBASIC8.39□□□□□ -1.07
USH2AO75445 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC8.39□□□□□ -1.07
USH2AO75445 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC8.39□□□□□ -1.07
USH2AO75445 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC8.39□□□□□ -1.07
USH2AO75445 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC8.39□□□□□ -1.07
USH2AO75445 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC8.39□□□□□ -1.07
USH2AO75445 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC8.39□□□□□ -1.07
USH2AO75445 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
USH2AO75445 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
USH2AO75445 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
USH2AO75445 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC8.39□□□□□ -1.07
USH2AO75445 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC8.39□□□□□ -1.07
USH2AO75445 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC8.39□□□□□ -1.07
USH2AO75445 MIR770-201ENST00000390219 98 ntBASIC8.39□□□□□ -1.07
USH2AO75445 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC8.39□□□□□ -1.07
USH2AO75445 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
USH2AO75445 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
USH2AO75445 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC8.39□□□□□ -1.07
USH2AO75445 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC8.39□□□□□ -1.07
USH2AO75445 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
USH2AO75445 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC8.39□□□□□ -1.07
USH2AO75445 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC8.38□□□□□ -1.07
USH2AO75445 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
USH2AO75445 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC8.38□□□□□ -1.07
USH2AO75445 MCCD1P2-201ENST00000423228 335 ntBASIC8.38□□□□□ -1.07
USH2AO75445 AC190387.1-201ENST00000551683 408 ntBASIC8.38□□□□□ -1.07
USH2AO75445 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC8.38□□□□□ -1.07
USH2AO75445 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC8.38□□□□□ -1.07
USH2AO75445 AL606495.2-201ENST00000605867 535 ntBASIC8.38□□□□□ -1.07
USH2AO75445 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC8.38□□□□□ -1.07
USH2AO75445 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
USH2AO75445 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC8.38□□□□□ -1.07
USH2AO75445 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC8.38□□□□□ -1.07
USH2AO75445 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC8.38□□□□□ -1.07
USH2AO75445 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
USH2AO75445 AC063926.2-201ENST00000623766 1308 ntBASIC8.38□□□□□ -1.07
USH2AO75445 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
USH2AO75445 CCS-201ENST00000310190 942 ntTSL 5 BASIC8.38□□□□□ -1.07
USH2AO75445 PMP22-202ENST00000395936 816 ntTSL 3 BASIC8.38□□□□□ -1.07
USH2AO75445 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC8.38□□□□□ -1.07
USH2AO75445 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC8.38□□□□□ -1.07
USH2AO75445 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
USH2AO75445 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC8.38□□□□□ -1.07
USH2AO75445 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC8.38□□□□□ -1.07
USH2AO75445 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC8.38□□□□□ -1.07
USH2AO75445 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC8.38□□□□□ -1.07
USH2AO75445 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
USH2AO75445 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC8.38□□□□□ -1.07
USH2AO75445 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC8.38□□□□□ -1.07
USH2AO75445 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
USH2AO75445 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC8.38□□□□□ -1.07
USH2AO75445 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC8.38□□□□□ -1.07
USH2AO75445 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
USH2AO75445 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC8.38□□□□□ -1.07
USH2AO75445 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
USH2AO75445 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC8.38□□□□□ -1.07
USH2AO75445 UNC93B6-202ENST00000528242 690 ntBASIC8.38□□□□□ -1.07
USH2AO75445 PPOX-214ENST00000535223 664 ntTSL 3 BASIC8.38□□□□□ -1.07
USH2AO75445 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC8.38□□□□□ -1.07
USH2AO75445 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
USH2AO75445 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC8.38□□□□□ -1.07
USH2AO75445 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC8.38□□□□□ -1.07
USH2AO75445 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC8.38□□□□□ -1.07
USH2AO75445 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
USH2AO75445 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC8.38□□□□□ -1.07
USH2AO75445 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
USH2AO75445 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC8.38□□□□□ -1.07
USH2AO75445 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC8.38□□□□□ -1.07
USH2AO75445 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
USH2AO75445 PNMT-202ENST00000394246 821 ntTSL 2 BASIC8.38□□□□□ -1.07
USH2AO75445 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC8.38□□□□□ -1.07
USH2AO75445 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC8.38□□□□□ -1.07
USH2AO75445 AC040169.1-201ENST00000565382 521 ntBASIC8.38□□□□□ -1.07
USH2AO75445 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC8.38□□□□□ -1.07
USH2AO75445 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
USH2AO75445 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
USH2AO75445 AC092667.1-201ENST00000434301 2586 ntBASIC8.38□□□□□ -1.07
USH2AO75445 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC8.38□□□□□ -1.07
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms