Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
TRAV1-1A0A0B4J248 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
TRAV1-1A0A0B4J248 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
TRAV1-1A0A0B4J248 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
TRAV1-1A0A0B4J248 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC14.72□□□□□ -0.05
TRAV1-1A0A0B4J248 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC14.72□□□□□ -0.05
TRAV1-1A0A0B4J248 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
TRAV1-1A0A0B4J248 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC14.71□□□□□ -0.05
TRAV1-1A0A0B4J248 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC14.71□□□□□ -0.05
TRAV1-1A0A0B4J248 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
TRAV1-1A0A0B4J248 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
TRAV1-1A0A0B4J248 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
TRAV1-1A0A0B4J248 AL118508.1-201ENST00000613502 2345 ntBASIC14.71□□□□□ -0.05
TRAV1-1A0A0B4J248 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
TRAV1-1A0A0B4J248 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
TRAV1-1A0A0B4J248 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
TRAV1-1A0A0B4J248 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC14.71□□□□□ -0.05
TRAV1-1A0A0B4J248 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
TRAV1-1A0A0B4J248 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
TRAV1-1A0A0B4J248 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
TRAV1-1A0A0B4J248 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
TRAV1-1A0A0B4J248 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
TRAV1-1A0A0B4J248 AL356441.2-201ENST00000443009 864 ntBASIC14.71□□□□□ -0.05
TRAV1-1A0A0B4J248 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC14.71□□□□□ -0.05
TRAV1-1A0A0B4J248 AC091305.1-201ENST00000479476 895 ntBASIC14.71□□□□□ -0.05
TRAV1-1A0A0B4J248 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC14.71□□□□□ -0.05
TRAV1-1A0A0B4J248 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC14.71□□□□□ -0.05
TRAV1-1A0A0B4J248 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC14.71□□□□□ -0.05
TRAV1-1A0A0B4J248 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
TRAV1-1A0A0B4J248 MIR6084-201ENST00000622012 110 ntBASIC14.71□□□□□ -0.05
TRAV1-1A0A0B4J248 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
TRAV1-1A0A0B4J248 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
TRAV1-1A0A0B4J248 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
TRAV1-1A0A0B4J248 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
TRAV1-1A0A0B4J248 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
TRAV1-1A0A0B4J248 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
TRAV1-1A0A0B4J248 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
TRAV1-1A0A0B4J248 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
TRAV1-1A0A0B4J248 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC14.71□□□□□ -0.05
TRAV1-1A0A0B4J248 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
TRAV1-1A0A0B4J248 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC14.71□□□□□ -0.05
TRAV1-1A0A0B4J248 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
TRAV1-1A0A0B4J248 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
TRAV1-1A0A0B4J248 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
TRAV1-1A0A0B4J248 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.06
TRAV1-1A0A0B4J248 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.06
TRAV1-1A0A0B4J248 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.06
TRAV1-1A0A0B4J248 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC14.71□□□□□ -0.06
TRAV1-1A0A0B4J248 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC14.71□□□□□ -0.06
TRAV1-1A0A0B4J248 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
TRAV1-1A0A0B4J248 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.06
TRAV1-1A0A0B4J248 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
TRAV1-1A0A0B4J248 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
TRAV1-1A0A0B4J248 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.06
TRAV1-1A0A0B4J248 NKILA-202ENST00000614771 2598 ntBASIC14.71□□□□□ -0.06
TRAV1-1A0A0B4J248 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
TRAV1-1A0A0B4J248 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC14.7□□□□□ -0.06
TRAV1-1A0A0B4J248 AL121761.2-201ENST00000598007 1648 ntBASIC14.7□□□□□ -0.06
TRAV1-1A0A0B4J248 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
TRAV1-1A0A0B4J248 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
TRAV1-1A0A0B4J248 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
TRAV1-1A0A0B4J248 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC14.7□□□□□ -0.06
TRAV1-1A0A0B4J248 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
TRAV1-1A0A0B4J248 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
TRAV1-1A0A0B4J248 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
TRAV1-1A0A0B4J248 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
TRAV1-1A0A0B4J248 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
TRAV1-1A0A0B4J248 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
TRAV1-1A0A0B4J248 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC14.7□□□□□ -0.06
TRAV1-1A0A0B4J248 NME4-202ENST00000382940 766 ntTSL 3 BASIC14.7□□□□□ -0.06
TRAV1-1A0A0B4J248 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
TRAV1-1A0A0B4J248 MIR939-201ENST00000401314 82 ntBASIC14.7□□□□□ -0.06
TRAV1-1A0A0B4J248 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
TRAV1-1A0A0B4J248 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC14.7□□□□□ -0.06
TRAV1-1A0A0B4J248 TERF1P5-201ENST00000477545 1207 ntBASIC14.7□□□□□ -0.06
TRAV1-1A0A0B4J248 C2orf69P4-201ENST00000565394 541 ntBASIC14.7□□□□□ -0.06
TRAV1-1A0A0B4J248 NME4-211ENST00000620944 1193 ntTSL 2 BASIC14.7□□□□□ -0.06
TRAV1-1A0A0B4J248 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC14.7□□□□□ -0.06
TRAV1-1A0A0B4J248 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
TRAV1-1A0A0B4J248 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
TRAV1-1A0A0B4J248 LINC02228-203ENST00000641970 1355 ntBASIC14.7□□□□□ -0.06
TRAV1-1A0A0B4J248 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
TRAV1-1A0A0B4J248 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
TRAV1-1A0A0B4J248 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
TRAV1-1A0A0B4J248 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
TRAV1-1A0A0B4J248 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
TRAV1-1A0A0B4J248 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
TRAV1-1A0A0B4J248 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
TRAV1-1A0A0B4J248 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
TRAV1-1A0A0B4J248 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC14.69□□□□□ -0.06
TRAV1-1A0A0B4J248 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC14.69□□□□□ -0.06
TRAV1-1A0A0B4J248 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
TRAV1-1A0A0B4J248 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC14.69□□□□□ -0.06
TRAV1-1A0A0B4J248 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
TRAV1-1A0A0B4J248 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
TRAV1-1A0A0B4J248 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
TRAV1-1A0A0B4J248 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
TRAV1-1A0A0B4J248 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
TRAV1-1A0A0B4J248 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
TRAV1-1A0A0B4J248 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC14.69□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms