Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CTDP1Q9Y5B0 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CTDP1Q9Y5B0 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CTDP1Q9Y5B0 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
CTDP1Q9Y5B0 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CTDP1Q9Y5B0 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC21.78■■□□□ 1.08
CTDP1Q9Y5B0 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC21.78■■□□□ 1.08
CTDP1Q9Y5B0 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CTDP1Q9Y5B0 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CTDP1Q9Y5B0 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CTDP1Q9Y5B0 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC21.78■■□□□ 1.08
CTDP1Q9Y5B0 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CTDP1Q9Y5B0 ZNF444P1-201ENST00000559497 298 ntBASIC21.78■■□□□ 1.08
CTDP1Q9Y5B0 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC21.78■■□□□ 1.08
CTDP1Q9Y5B0 AC024243.1-201ENST00000609234 778 ntBASIC21.78■■□□□ 1.08
CTDP1Q9Y5B0 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CTDP1Q9Y5B0 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC21.78■■□□□ 1.08
CTDP1Q9Y5B0 KRT8P3-201ENST00000519669 1449 ntBASIC21.78■■□□□ 1.08
CTDP1Q9Y5B0 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CTDP1Q9Y5B0 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC21.78■■□□□ 1.08
CTDP1Q9Y5B0 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CTDP1Q9Y5B0 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC21.78■■□□□ 1.08
CTDP1Q9Y5B0 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC21.77■■□□□ 1.08
CTDP1Q9Y5B0 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CTDP1Q9Y5B0 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CTDP1Q9Y5B0 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC21.77■■□□□ 1.08
CTDP1Q9Y5B0 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
CTDP1Q9Y5B0 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CTDP1Q9Y5B0 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC21.77■■□□□ 1.08
CTDP1Q9Y5B0 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
CTDP1Q9Y5B0 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
CTDP1Q9Y5B0 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC21.77■■□□□ 1.08
CTDP1Q9Y5B0 TREX1-205ENST00000625293 1783 ntBASIC21.77■■□□□ 1.08
CTDP1Q9Y5B0 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CTDP1Q9Y5B0 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CTDP1Q9Y5B0 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
CTDP1Q9Y5B0 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
CTDP1Q9Y5B0 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
CTDP1Q9Y5B0 GRAMD4P1-201ENST00000435181 1110 ntBASIC21.77■■□□□ 1.08
CTDP1Q9Y5B0 NMU-205ENST00000511469 756 ntTSL 3 BASIC21.77■■□□□ 1.08
CTDP1Q9Y5B0 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC21.77■■□□□ 1.08
CTDP1Q9Y5B0 USF2-205ENST00000594064 1179 ntTSL 2 BASIC21.77■■□□□ 1.08
CTDP1Q9Y5B0 FGF14-AS2-201ENST00000606448 1074 ntBASIC21.77■■□□□ 1.08
CTDP1Q9Y5B0 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CTDP1Q9Y5B0 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CTDP1Q9Y5B0 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CTDP1Q9Y5B0 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CTDP1Q9Y5B0 AC005332.1-201ENST00000577698 1310 ntBASIC21.77■■□□□ 1.07
CTDP1Q9Y5B0 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
CTDP1Q9Y5B0 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
CTDP1Q9Y5B0 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CTDP1Q9Y5B0 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CTDP1Q9Y5B0 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CTDP1Q9Y5B0 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CTDP1Q9Y5B0 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
CTDP1Q9Y5B0 COPS8-203ENST00000409334 794 ntTSL 5 BASIC21.76■■□□□ 1.07
CTDP1Q9Y5B0 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC21.76■■□□□ 1.07
CTDP1Q9Y5B0 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC21.76■■□□□ 1.07
CTDP1Q9Y5B0 CD81-212ENST00000526072 1172 ntTSL 5 BASIC21.76■■□□□ 1.07
CTDP1Q9Y5B0 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CTDP1Q9Y5B0 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
CTDP1Q9Y5B0 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CTDP1Q9Y5B0 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
CTDP1Q9Y5B0 TP73-202ENST00000354437 2140 ntTSL 5 BASIC21.76■■□□□ 1.07
CTDP1Q9Y5B0 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC21.76■■□□□ 1.07
CTDP1Q9Y5B0 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC21.76■■□□□ 1.07
CTDP1Q9Y5B0 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CTDP1Q9Y5B0 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CTDP1Q9Y5B0 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
CTDP1Q9Y5B0 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CTDP1Q9Y5B0 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CTDP1Q9Y5B0 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CTDP1Q9Y5B0 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CTDP1Q9Y5B0 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CTDP1Q9Y5B0 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CTDP1Q9Y5B0 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC21.75■■□□□ 1.07
CTDP1Q9Y5B0 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
CTDP1Q9Y5B0 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CTDP1Q9Y5B0 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
CTDP1Q9Y5B0 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC21.75■■□□□ 1.07
CTDP1Q9Y5B0 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC21.75■■□□□ 1.07
CTDP1Q9Y5B0 SPDYE15P-201ENST00000424157 909 ntBASIC21.75■■□□□ 1.07
CTDP1Q9Y5B0 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CTDP1Q9Y5B0 AL136038.3-201ENST00000561909 1096 ntBASIC21.75■■□□□ 1.07
CTDP1Q9Y5B0 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC21.75■■□□□ 1.07
CTDP1Q9Y5B0 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC21.75■■□□□ 1.07
CTDP1Q9Y5B0 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
CTDP1Q9Y5B0 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC21.75■■□□□ 1.07
CTDP1Q9Y5B0 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CTDP1Q9Y5B0 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC21.75■■□□□ 1.07
CTDP1Q9Y5B0 KATNBL1P6-202ENST00000562413 1466 ntBASIC21.75■■□□□ 1.07
CTDP1Q9Y5B0 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC21.75■■□□□ 1.07
CTDP1Q9Y5B0 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CTDP1Q9Y5B0 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
CTDP1Q9Y5B0 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC21.75■■□□□ 1.07
CTDP1Q9Y5B0 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CTDP1Q9Y5B0 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CTDP1Q9Y5B0 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC21.74■■□□□ 1.07
CTDP1Q9Y5B0 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC21.74■■□□□ 1.07
CTDP1Q9Y5B0 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms