Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC20.29■□□□□ 0.84
CNTN3Q9P232 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CNTN3Q9P232 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
CNTN3Q9P232 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CNTN3Q9P232 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CNTN3Q9P232 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CNTN3Q9P232 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CNTN3Q9P232 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CNTN3Q9P232 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC20.28■□□□□ 0.84
CNTN3Q9P232 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC20.28■□□□□ 0.84
CNTN3Q9P232 AC116562.4-201ENST00000641316 2276 ntBASIC20.28■□□□□ 0.84
CNTN3Q9P232 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
CNTN3Q9P232 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
CNTN3Q9P232 COPE-203ENST00000351079 907 ntTSL 2 BASIC20.28■□□□□ 0.84
CNTN3Q9P232 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CNTN3Q9P232 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC20.28■□□□□ 0.84
CNTN3Q9P232 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CNTN3Q9P232 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CNTN3Q9P232 CD81-212ENST00000526072 1172 ntTSL 5 BASIC20.28■□□□□ 0.84
CNTN3Q9P232 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC20.28■□□□□ 0.84
CNTN3Q9P232 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC20.28■□□□□ 0.84
CNTN3Q9P232 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC20.28■□□□□ 0.84
CNTN3Q9P232 AC087388.1-201ENST00000571370 1112 ntBASIC20.28■□□□□ 0.84
CNTN3Q9P232 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CNTN3Q9P232 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CNTN3Q9P232 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CNTN3Q9P232 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CNTN3Q9P232 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
CNTN3Q9P232 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC20.28■□□□□ 0.84
CNTN3Q9P232 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CNTN3Q9P232 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CNTN3Q9P232 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CNTN3Q9P232 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CNTN3Q9P232 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC20.27■□□□□ 0.84
CNTN3Q9P232 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CNTN3Q9P232 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CNTN3Q9P232 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CNTN3Q9P232 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CNTN3Q9P232 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
CNTN3Q9P232 AL161938.1-201ENST00000569833 2180 ntBASIC20.27■□□□□ 0.84
CNTN3Q9P232 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
CNTN3Q9P232 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CNTN3Q9P232 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
CNTN3Q9P232 ENSA-205ENST00000361532 792 ntTSL 2 BASIC20.27■□□□□ 0.84
CNTN3Q9P232 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CNTN3Q9P232 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC20.27■□□□□ 0.84
CNTN3Q9P232 KRT18P38-201ENST00000449496 1282 ntBASIC20.27■□□□□ 0.84
CNTN3Q9P232 AL359075.1-203ENST00000462729 1002 ntBASIC20.27■□□□□ 0.84
CNTN3Q9P232 RNF146-204ENST00000476956 884 ntTSL 2 BASIC20.27■□□□□ 0.84
CNTN3Q9P232 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC20.27■□□□□ 0.84
CNTN3Q9P232 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CNTN3Q9P232 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC20.27■□□□□ 0.84
CNTN3Q9P232 AC068587.9-201ENST00000641814 219 ntBASIC20.27■□□□□ 0.84
CNTN3Q9P232 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CNTN3Q9P232 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CNTN3Q9P232 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
CNTN3Q9P232 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CNTN3Q9P232 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.83
CNTN3Q9P232 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC20.27■□□□□ 0.83
CNTN3Q9P232 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC20.26■□□□□ 0.83
CNTN3Q9P232 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CNTN3Q9P232 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CNTN3Q9P232 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CNTN3Q9P232 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CNTN3Q9P232 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CNTN3Q9P232 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CNTN3Q9P232 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC20.26■□□□□ 0.83
CNTN3Q9P232 STARP1-201ENST00000397973 869 ntBASIC20.26■□□□□ 0.83
CNTN3Q9P232 AL031133.1-201ENST00000406807 723 ntBASIC20.26■□□□□ 0.83
CNTN3Q9P232 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CNTN3Q9P232 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC20.26■□□□□ 0.83
CNTN3Q9P232 SNX5-210ENST00000481323 562 ntTSL 3 BASIC20.26■□□□□ 0.83
CNTN3Q9P232 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CNTN3Q9P232 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC20.26■□□□□ 0.83
CNTN3Q9P232 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC20.26■□□□□ 0.83
CNTN3Q9P232 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC20.26■□□□□ 0.83
CNTN3Q9P232 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC20.26■□□□□ 0.83
CNTN3Q9P232 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC20.26■□□□□ 0.83
CNTN3Q9P232 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CNTN3Q9P232 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC20.26■□□□□ 0.83
CNTN3Q9P232 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC20.26■□□□□ 0.83
CNTN3Q9P232 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CNTN3Q9P232 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC20.26■□□□□ 0.83
CNTN3Q9P232 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC20.26■□□□□ 0.83
CNTN3Q9P232 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CNTN3Q9P232 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CNTN3Q9P232 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC20.25■□□□□ 0.83
CNTN3Q9P232 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CNTN3Q9P232 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC20.25■□□□□ 0.83
CNTN3Q9P232 MED25-212ENST00000618715 1467 ntTSL 5 BASIC20.25■□□□□ 0.83
CNTN3Q9P232 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CNTN3Q9P232 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
CNTN3Q9P232 AL020996.1-203ENST00000536896 2307 ntBASIC20.25■□□□□ 0.83
CNTN3Q9P232 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
CNTN3Q9P232 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CNTN3Q9P232 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
CNTN3Q9P232 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
CNTN3Q9P232 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CNTN3Q9P232 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CNTN3Q9P232 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms