Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC16.63■□□□□ 0.25
MMP28Q9H239 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
MMP28Q9H239 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
MMP28Q9H239 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
MMP28Q9H239 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
MMP28Q9H239 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
MMP28Q9H239 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
MMP28Q9H239 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
MMP28Q9H239 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
MMP28Q9H239 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
MMP28Q9H239 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
MMP28Q9H239 AC087633.2-202ENST00000565166 1439 ntBASIC16.62■□□□□ 0.25
MMP28Q9H239 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
MMP28Q9H239 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
MMP28Q9H239 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC16.62■□□□□ 0.25
MMP28Q9H239 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
MMP28Q9H239 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
MMP28Q9H239 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
MMP28Q9H239 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC16.62■□□□□ 0.25
MMP28Q9H239 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
MMP28Q9H239 AC073592.3-201ENST00000625118 1834 ntBASIC16.62■□□□□ 0.25
MMP28Q9H239 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
MMP28Q9H239 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
MMP28Q9H239 MCRIP2P1-201ENST00000394346 511 ntBASIC16.62■□□□□ 0.25
MMP28Q9H239 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC16.62■□□□□ 0.25
MMP28Q9H239 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC16.62■□□□□ 0.25
MMP28Q9H239 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC16.62■□□□□ 0.25
MMP28Q9H239 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC16.62■□□□□ 0.25
MMP28Q9H239 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
MMP28Q9H239 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
MMP28Q9H239 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
MMP28Q9H239 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
MMP28Q9H239 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
MMP28Q9H239 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
MMP28Q9H239 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
MMP28Q9H239 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC16.62■□□□□ 0.25
MMP28Q9H239 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
MMP28Q9H239 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
MMP28Q9H239 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC16.62■□□□□ 0.25
MMP28Q9H239 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC16.62■□□□□ 0.25
MMP28Q9H239 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
MMP28Q9H239 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
MMP28Q9H239 AC141586.5-201ENST00000624546 2050 ntBASIC16.61■□□□□ 0.25
MMP28Q9H239 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
MMP28Q9H239 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
MMP28Q9H239 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
MMP28Q9H239 SIRPAP1-201ENST00000448467 1770 ntBASIC16.61■□□□□ 0.25
MMP28Q9H239 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
MMP28Q9H239 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC16.61■□□□□ 0.25
MMP28Q9H239 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
MMP28Q9H239 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
MMP28Q9H239 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
MMP28Q9H239 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
MMP28Q9H239 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
MMP28Q9H239 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
MMP28Q9H239 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC16.61■□□□□ 0.25
MMP28Q9H239 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC16.61■□□□□ 0.25
MMP28Q9H239 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
MMP28Q9H239 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
MMP28Q9H239 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
MMP28Q9H239 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
MMP28Q9H239 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
MMP28Q9H239 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
MMP28Q9H239 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC16.61■□□□□ 0.25
MMP28Q9H239 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
MMP28Q9H239 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC16.61■□□□□ 0.25
MMP28Q9H239 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC16.61■□□□□ 0.25
MMP28Q9H239 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
MMP28Q9H239 AC133552.2-202ENST00000575694 574 ntBASIC16.61■□□□□ 0.25
MMP28Q9H239 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC16.61■□□□□ 0.25
MMP28Q9H239 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC16.61■□□□□ 0.25
MMP28Q9H239 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC16.61■□□□□ 0.25
MMP28Q9H239 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
MMP28Q9H239 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
MMP28Q9H239 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC16.61■□□□□ 0.25
MMP28Q9H239 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
MMP28Q9H239 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC16.61■□□□□ 0.25
MMP28Q9H239 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
MMP28Q9H239 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
MMP28Q9H239 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
MMP28Q9H239 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
MMP28Q9H239 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
MMP28Q9H239 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
MMP28Q9H239 AP001271.2-201ENST00000624018 1556 ntBASIC16.6■□□□□ 0.25
MMP28Q9H239 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
MMP28Q9H239 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
MMP28Q9H239 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
MMP28Q9H239 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC16.6■□□□□ 0.25
MMP28Q9H239 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
MMP28Q9H239 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
MMP28Q9H239 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
MMP28Q9H239 AL512625.2-201ENST00000417533 625 ntBASIC16.6■□□□□ 0.25
MMP28Q9H239 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
MMP28Q9H239 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
MMP28Q9H239 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC16.6■□□□□ 0.25
MMP28Q9H239 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
MMP28Q9H239 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
MMP28Q9H239 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
MMP28Q9H239 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
MMP28Q9H239 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms