Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
PAAF1Q9BRP4 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
PAAF1Q9BRP4 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
PAAF1Q9BRP4 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC20.12■□□□□ 0.81
PAAF1Q9BRP4 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC20.12■□□□□ 0.81
PAAF1Q9BRP4 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC20.12■□□□□ 0.81
PAAF1Q9BRP4 NDUFV2-AS1-203ENST00000608008 779 ntBASIC20.12■□□□□ 0.81
PAAF1Q9BRP4 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC20.12■□□□□ 0.81
PAAF1Q9BRP4 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
PAAF1Q9BRP4 AC112497.1-201ENST00000624824 639 ntBASIC20.12■□□□□ 0.81
PAAF1Q9BRP4 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC20.12■□□□□ 0.81
PAAF1Q9BRP4 AL157888.1-201ENST00000631930 593 ntBASIC20.12■□□□□ 0.81
PAAF1Q9BRP4 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PAAF1Q9BRP4 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
PAAF1Q9BRP4 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PAAF1Q9BRP4 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PAAF1Q9BRP4 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
PAAF1Q9BRP4 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
PAAF1Q9BRP4 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC20.12■□□□□ 0.81
PAAF1Q9BRP4 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PAAF1Q9BRP4 KRT8P32-201ENST00000512863 1461 ntBASIC20.11■□□□□ 0.81
PAAF1Q9BRP4 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
PAAF1Q9BRP4 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PAAF1Q9BRP4 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PAAF1Q9BRP4 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PAAF1Q9BRP4 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC20.11■□□□□ 0.81
PAAF1Q9BRP4 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PAAF1Q9BRP4 CNP-204ENST00000472031 1019 ntTSL 2 BASIC20.11■□□□□ 0.81
PAAF1Q9BRP4 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PAAF1Q9BRP4 KRT18P56-201ENST00000507275 550 ntBASIC20.11■□□□□ 0.81
PAAF1Q9BRP4 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC20.11■□□□□ 0.81
PAAF1Q9BRP4 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
PAAF1Q9BRP4 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
PAAF1Q9BRP4 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC20.11■□□□□ 0.81
PAAF1Q9BRP4 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PAAF1Q9BRP4 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
PAAF1Q9BRP4 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
PAAF1Q9BRP4 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
PAAF1Q9BRP4 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
PAAF1Q9BRP4 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC20.1■□□□□ 0.81
PAAF1Q9BRP4 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PAAF1Q9BRP4 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC20.1■□□□□ 0.81
PAAF1Q9BRP4 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
PAAF1Q9BRP4 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PAAF1Q9BRP4 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
PAAF1Q9BRP4 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC20.1■□□□□ 0.81
PAAF1Q9BRP4 AC034232.1-201ENST00000506026 1064 ntBASIC20.1■□□□□ 0.81
PAAF1Q9BRP4 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC20.1■□□□□ 0.81
PAAF1Q9BRP4 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC20.1■□□□□ 0.81
PAAF1Q9BRP4 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC20.1■□□□□ 0.81
PAAF1Q9BRP4 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC20.1■□□□□ 0.81
PAAF1Q9BRP4 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
PAAF1Q9BRP4 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC20.1■□□□□ 0.81
PAAF1Q9BRP4 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PAAF1Q9BRP4 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC20.1■□□□□ 0.81
PAAF1Q9BRP4 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
PAAF1Q9BRP4 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC20.09■□□□□ 0.81
PAAF1Q9BRP4 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC20.09■□□□□ 0.81
PAAF1Q9BRP4 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
PAAF1Q9BRP4 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC20.09■□□□□ 0.81
PAAF1Q9BRP4 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC20.09■□□□□ 0.81
PAAF1Q9BRP4 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PAAF1Q9BRP4 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
PAAF1Q9BRP4 ENSA-205ENST00000361532 792 ntTSL 2 BASIC20.09■□□□□ 0.81
PAAF1Q9BRP4 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
PAAF1Q9BRP4 GRAMD4P1-201ENST00000435181 1110 ntBASIC20.09■□□□□ 0.81
PAAF1Q9BRP4 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
PAAF1Q9BRP4 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC20.09■□□□□ 0.81
PAAF1Q9BRP4 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC20.09■□□□□ 0.81
PAAF1Q9BRP4 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC20.09■□□□□ 0.81
PAAF1Q9BRP4 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
PAAF1Q9BRP4 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PAAF1Q9BRP4 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
PAAF1Q9BRP4 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC20.09■□□□□ 0.81
PAAF1Q9BRP4 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PAAF1Q9BRP4 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC20.09■□□□□ 0.81
PAAF1Q9BRP4 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
PAAF1Q9BRP4 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
PAAF1Q9BRP4 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
PAAF1Q9BRP4 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
PAAF1Q9BRP4 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
PAAF1Q9BRP4 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
PAAF1Q9BRP4 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
PAAF1Q9BRP4 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
PAAF1Q9BRP4 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
PAAF1Q9BRP4 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
PAAF1Q9BRP4 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC20.08■□□□□ 0.81
PAAF1Q9BRP4 AC069148.1-201ENST00000608741 768 ntBASIC20.08■□□□□ 0.81
PAAF1Q9BRP4 ADM-207ENST00000530439 1839 ntTSL 2 BASIC20.08■□□□□ 0.8
PAAF1Q9BRP4 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.8
PAAF1Q9BRP4 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
PAAF1Q9BRP4 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
PAAF1Q9BRP4 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
PAAF1Q9BRP4 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
PAAF1Q9BRP4 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
PAAF1Q9BRP4 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC20.07■□□□□ 0.8
PAAF1Q9BRP4 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
PAAF1Q9BRP4 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC20.07■□□□□ 0.8
PAAF1Q9BRP4 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
PAAF1Q9BRP4 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms