Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
SKA1Q96BD8 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SKA1Q96BD8 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC19.33■□□□□ 0.68
SKA1Q96BD8 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC19.33■□□□□ 0.68
SKA1Q96BD8 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SKA1Q96BD8 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SKA1Q96BD8 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SKA1Q96BD8 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
SKA1Q96BD8 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC19.33■□□□□ 0.68
SKA1Q96BD8 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SKA1Q96BD8 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC19.33■□□□□ 0.68
SKA1Q96BD8 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC19.32■□□□□ 0.68
SKA1Q96BD8 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC19.32■□□□□ 0.68
SKA1Q96BD8 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SKA1Q96BD8 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
SKA1Q96BD8 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC19.32■□□□□ 0.68
SKA1Q96BD8 AC005332.8-201ENST00000622750 2735 ntBASIC19.32■□□□□ 0.68
SKA1Q96BD8 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC19.32■□□□□ 0.68
SKA1Q96BD8 AC009113.1-201ENST00000570267 2443 ntBASIC19.32■□□□□ 0.68
SKA1Q96BD8 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SKA1Q96BD8 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SKA1Q96BD8 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SKA1Q96BD8 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SKA1Q96BD8 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC19.32■□□□□ 0.68
SKA1Q96BD8 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC19.32■□□□□ 0.68
SKA1Q96BD8 AC004951.3-201ENST00000418645 1148 ntBASIC19.32■□□□□ 0.68
SKA1Q96BD8 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SKA1Q96BD8 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC19.32■□□□□ 0.68
SKA1Q96BD8 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC19.32■□□□□ 0.68
SKA1Q96BD8 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC19.32■□□□□ 0.68
SKA1Q96BD8 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SKA1Q96BD8 GPX4-207ENST00000589115 812 ntTSL 2 BASIC19.32■□□□□ 0.68
SKA1Q96BD8 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
SKA1Q96BD8 AP000692.2-201ENST00000608391 879 ntBASIC19.32■□□□□ 0.68
SKA1Q96BD8 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SKA1Q96BD8 AC130371.2-201ENST00000619443 611 ntBASIC19.32■□□□□ 0.68
SKA1Q96BD8 LGALS8-AS1-201ENST00000487567 1457 ntBASIC19.32■□□□□ 0.68
SKA1Q96BD8 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC19.32■□□□□ 0.68
SKA1Q96BD8 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
SKA1Q96BD8 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC19.32■□□□□ 0.68
SKA1Q96BD8 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
SKA1Q96BD8 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
SKA1Q96BD8 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
SKA1Q96BD8 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SKA1Q96BD8 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SKA1Q96BD8 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC19.31■□□□□ 0.68
SKA1Q96BD8 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SKA1Q96BD8 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SKA1Q96BD8 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SKA1Q96BD8 AC104581.1-202ENST00000635932 2618 ntBASIC19.31■□□□□ 0.68
SKA1Q96BD8 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SKA1Q96BD8 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SKA1Q96BD8 CCR12P-201ENST00000446203 998 ntBASIC19.31■□□□□ 0.68
SKA1Q96BD8 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC19.31■□□□□ 0.68
SKA1Q96BD8 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC19.31■□□□□ 0.68
SKA1Q96BD8 DUX4L26-201ENST00000489078 1255 ntBASIC19.31■□□□□ 0.68
SKA1Q96BD8 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC19.31■□□□□ 0.68
SKA1Q96BD8 AC011298.2-201ENST00000617989 482 ntBASIC19.31■□□□□ 0.68
SKA1Q96BD8 AC116562.4-202ENST00000641738 218 ntBASIC19.31■□□□□ 0.68
SKA1Q96BD8 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SKA1Q96BD8 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
SKA1Q96BD8 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SKA1Q96BD8 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC19.31■□□□□ 0.68
SKA1Q96BD8 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SKA1Q96BD8 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC19.31■□□□□ 0.68
SKA1Q96BD8 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SKA1Q96BD8 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC19.31■□□□□ 0.68
SKA1Q96BD8 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC19.31■□□□□ 0.68
SKA1Q96BD8 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SKA1Q96BD8 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SKA1Q96BD8 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
SKA1Q96BD8 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC19.3■□□□□ 0.68
SKA1Q96BD8 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SKA1Q96BD8 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
SKA1Q96BD8 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SKA1Q96BD8 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SKA1Q96BD8 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SKA1Q96BD8 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
SKA1Q96BD8 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
SKA1Q96BD8 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC19.3■□□□□ 0.68
SKA1Q96BD8 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SKA1Q96BD8 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC19.3■□□□□ 0.68
SKA1Q96BD8 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC19.3■□□□□ 0.68
SKA1Q96BD8 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SKA1Q96BD8 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC19.3■□□□□ 0.68
SKA1Q96BD8 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
SKA1Q96BD8 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SKA1Q96BD8 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC19.3■□□□□ 0.68
SKA1Q96BD8 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC19.3■□□□□ 0.68
SKA1Q96BD8 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
SKA1Q96BD8 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
SKA1Q96BD8 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SKA1Q96BD8 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SKA1Q96BD8 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC19.3■□□□□ 0.68
SKA1Q96BD8 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
SKA1Q96BD8 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC19.29■□□□□ 0.68
SKA1Q96BD8 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
SKA1Q96BD8 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SKA1Q96BD8 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
SKA1Q96BD8 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms