Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
SHROOM3Q8TF72 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHROOM3Q8TF72 AL499627.1-201ENST00000569373 2188 ntBASIC19.22■□□□□ 0.67
SHROOM3Q8TF72 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHROOM3Q8TF72 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SHROOM3Q8TF72 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC19.22■□□□□ 0.67
SHROOM3Q8TF72 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHROOM3Q8TF72 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC19.22■□□□□ 0.67
SHROOM3Q8TF72 GPAT2P1-201ENST00000444924 1672 ntBASIC19.22■□□□□ 0.67
SHROOM3Q8TF72 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHROOM3Q8TF72 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHROOM3Q8TF72 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
SHROOM3Q8TF72 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
SHROOM3Q8TF72 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHROOM3Q8TF72 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC19.22■□□□□ 0.67
SHROOM3Q8TF72 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC19.22■□□□□ 0.67
SHROOM3Q8TF72 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
SHROOM3Q8TF72 KRT8P3-201ENST00000519669 1449 ntBASIC19.22■□□□□ 0.67
SHROOM3Q8TF72 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC19.22■□□□□ 0.67
SHROOM3Q8TF72 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SHROOM3Q8TF72 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC19.22■□□□□ 0.67
SHROOM3Q8TF72 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SHROOM3Q8TF72 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC19.21■□□□□ 0.67
SHROOM3Q8TF72 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC19.21■□□□□ 0.67
SHROOM3Q8TF72 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SHROOM3Q8TF72 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SHROOM3Q8TF72 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC19.21■□□□□ 0.67
SHROOM3Q8TF72 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC19.21■□□□□ 0.67
SHROOM3Q8TF72 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC19.21■□□□□ 0.67
SHROOM3Q8TF72 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC19.21■□□□□ 0.67
SHROOM3Q8TF72 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC19.21■□□□□ 0.67
SHROOM3Q8TF72 AL031598.1-201ENST00000561511 1773 ntBASIC19.21■□□□□ 0.67
SHROOM3Q8TF72 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SHROOM3Q8TF72 WIZP1-201ENST00000531444 2299 ntBASIC19.21■□□□□ 0.67
SHROOM3Q8TF72 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SHROOM3Q8TF72 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SHROOM3Q8TF72 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC19.21■□□□□ 0.67
SHROOM3Q8TF72 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SHROOM3Q8TF72 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC19.21■□□□□ 0.67
SHROOM3Q8TF72 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC19.21■□□□□ 0.67
SHROOM3Q8TF72 NME3-204ENST00000563498 920 ntTSL 2 BASIC19.21■□□□□ 0.67
SHROOM3Q8TF72 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
SHROOM3Q8TF72 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC19.21■□□□□ 0.67
SHROOM3Q8TF72 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC19.2■□□□□ 0.66
SHROOM3Q8TF72 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
SHROOM3Q8TF72 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHROOM3Q8TF72 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SHROOM3Q8TF72 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC19.2■□□□□ 0.66
SHROOM3Q8TF72 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SHROOM3Q8TF72 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHROOM3Q8TF72 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHROOM3Q8TF72 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC19.2■□□□□ 0.66
SHROOM3Q8TF72 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC19.2■□□□□ 0.66
SHROOM3Q8TF72 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHROOM3Q8TF72 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHROOM3Q8TF72 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC19.2■□□□□ 0.66
SHROOM3Q8TF72 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SHROOM3Q8TF72 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC19.2■□□□□ 0.66
SHROOM3Q8TF72 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC19.2■□□□□ 0.66
SHROOM3Q8TF72 TSPY17P-201ENST00000450329 467 ntBASIC19.2■□□□□ 0.66
SHROOM3Q8TF72 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC19.2■□□□□ 0.66
SHROOM3Q8TF72 FITM1-202ENST00000559294 800 ntBASIC19.2■□□□□ 0.66
SHROOM3Q8TF72 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SHROOM3Q8TF72 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SHROOM3Q8TF72 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SHROOM3Q8TF72 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC19.2■□□□□ 0.66
SHROOM3Q8TF72 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC19.2■□□□□ 0.66
SHROOM3Q8TF72 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHROOM3Q8TF72 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHROOM3Q8TF72 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHROOM3Q8TF72 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHROOM3Q8TF72 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHROOM3Q8TF72 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHROOM3Q8TF72 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHROOM3Q8TF72 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHROOM3Q8TF72 KRT18P57-201ENST00000443599 1254 ntBASIC19.19■□□□□ 0.66
SHROOM3Q8TF72 USF2-205ENST00000594064 1179 ntTSL 2 BASIC19.19■□□□□ 0.66
SHROOM3Q8TF72 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHROOM3Q8TF72 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC19.19■□□□□ 0.66
SHROOM3Q8TF72 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHROOM3Q8TF72 AC005082.1-201ENST00000413042 2259 ntBASIC19.19■□□□□ 0.66
SHROOM3Q8TF72 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SHROOM3Q8TF72 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHROOM3Q8TF72 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHROOM3Q8TF72 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHROOM3Q8TF72 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHROOM3Q8TF72 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC19.19■□□□□ 0.66
SHROOM3Q8TF72 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHROOM3Q8TF72 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SHROOM3Q8TF72 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC19.19■□□□□ 0.66
SHROOM3Q8TF72 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHROOM3Q8TF72 ECEL1P2-202ENST00000465689 757 ntBASIC19.19■□□□□ 0.66
SHROOM3Q8TF72 AP005242.2-201ENST00000580065 1175 ntBASIC19.19■□□□□ 0.66
SHROOM3Q8TF72 AC130371.2-201ENST00000619443 611 ntBASIC19.19■□□□□ 0.66
SHROOM3Q8TF72 AC010947.1-201ENST00000623454 693 ntBASIC19.19■□□□□ 0.66
SHROOM3Q8TF72 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC19.19■□□□□ 0.66
SHROOM3Q8TF72 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC19.19■□□□□ 0.66
SHROOM3Q8TF72 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
SHROOM3Q8TF72 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHROOM3Q8TF72 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms