Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 RCC2P3-201ENST00000418112 1537 ntBASIC18.37■□□□□ 0.53
LMX1AQ8TE12 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LMX1AQ8TE12 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
LMX1AQ8TE12 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LMX1AQ8TE12 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC18.37■□□□□ 0.53
LMX1AQ8TE12 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LMX1AQ8TE12 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LMX1AQ8TE12 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LMX1AQ8TE12 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC18.37■□□□□ 0.53
LMX1AQ8TE12 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC18.36■□□□□ 0.53
LMX1AQ8TE12 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
LMX1AQ8TE12 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LMX1AQ8TE12 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
LMX1AQ8TE12 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LMX1AQ8TE12 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
LMX1AQ8TE12 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
LMX1AQ8TE12 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
LMX1AQ8TE12 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
LMX1AQ8TE12 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
LMX1AQ8TE12 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LMX1AQ8TE12 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
LMX1AQ8TE12 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC18.36■□□□□ 0.53
LMX1AQ8TE12 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LMX1AQ8TE12 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC18.36■□□□□ 0.53
LMX1AQ8TE12 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LMX1AQ8TE12 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LMX1AQ8TE12 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
LMX1AQ8TE12 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LMX1AQ8TE12 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC18.36■□□□□ 0.53
LMX1AQ8TE12 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LMX1AQ8TE12 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LMX1AQ8TE12 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LMX1AQ8TE12 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LMX1AQ8TE12 SEC1P-202ENST00000473944 940 ntBASIC18.36■□□□□ 0.53
LMX1AQ8TE12 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC18.36■□□□□ 0.53
LMX1AQ8TE12 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC18.36■□□□□ 0.53
LMX1AQ8TE12 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC18.36■□□□□ 0.53
LMX1AQ8TE12 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC18.36■□□□□ 0.53
LMX1AQ8TE12 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LMX1AQ8TE12 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
LMX1AQ8TE12 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
LMX1AQ8TE12 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
LMX1AQ8TE12 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
LMX1AQ8TE12 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC18.35■□□□□ 0.53
LMX1AQ8TE12 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LMX1AQ8TE12 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LMX1AQ8TE12 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC18.35■□□□□ 0.53
LMX1AQ8TE12 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC18.35■□□□□ 0.53
LMX1AQ8TE12 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC18.35■□□□□ 0.53
LMX1AQ8TE12 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LMX1AQ8TE12 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LMX1AQ8TE12 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
LMX1AQ8TE12 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC18.35■□□□□ 0.53
LMX1AQ8TE12 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LMX1AQ8TE12 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
LMX1AQ8TE12 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
LMX1AQ8TE12 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC18.35■□□□□ 0.53
LMX1AQ8TE12 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
LMX1AQ8TE12 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
LMX1AQ8TE12 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC18.35■□□□□ 0.53
LMX1AQ8TE12 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC18.35■□□□□ 0.53
LMX1AQ8TE12 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC18.35■□□□□ 0.53
LMX1AQ8TE12 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LMX1AQ8TE12 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC18.35■□□□□ 0.53
LMX1AQ8TE12 BCL10-202ENST00000620248 774 ntTSL 5 BASIC18.35■□□□□ 0.53
LMX1AQ8TE12 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
LMX1AQ8TE12 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LMX1AQ8TE12 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LMX1AQ8TE12 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LMX1AQ8TE12 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC18.35■□□□□ 0.53
LMX1AQ8TE12 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
LMX1AQ8TE12 AL512353.2-201ENST00000448759 1962 ntBASIC18.35■□□□□ 0.53
LMX1AQ8TE12 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC18.35■□□□□ 0.53
LMX1AQ8TE12 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC18.35■□□□□ 0.53
LMX1AQ8TE12 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LMX1AQ8TE12 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC18.35■□□□□ 0.53
LMX1AQ8TE12 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
LMX1AQ8TE12 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
LMX1AQ8TE12 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.34■□□□□ 0.53
LMX1AQ8TE12 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC18.34■□□□□ 0.53
LMX1AQ8TE12 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC18.34■□□□□ 0.53
LMX1AQ8TE12 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LMX1AQ8TE12 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LMX1AQ8TE12 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LMX1AQ8TE12 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC18.34■□□□□ 0.53
LMX1AQ8TE12 CLEC4GP1-201ENST00000596555 870 ntBASIC18.34■□□□□ 0.53
LMX1AQ8TE12 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC18.34■□□□□ 0.53
LMX1AQ8TE12 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LMX1AQ8TE12 AL157888.1-201ENST00000631930 593 ntBASIC18.34■□□□□ 0.53
LMX1AQ8TE12 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LMX1AQ8TE12 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
LMX1AQ8TE12 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC18.34■□□□□ 0.53
LMX1AQ8TE12 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LMX1AQ8TE12 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LMX1AQ8TE12 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LMX1AQ8TE12 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
LMX1AQ8TE12 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LMX1AQ8TE12 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LMX1AQ8TE12 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LMX1AQ8TE12 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC18.33■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms