Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC22.33■■□□□ 1.17
NKX2-3Q8TAU0 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
NKX2-3Q8TAU0 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC22.33■■□□□ 1.17
NKX2-3Q8TAU0 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
NKX2-3Q8TAU0 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC22.33■■□□□ 1.17
NKX2-3Q8TAU0 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC22.33■■□□□ 1.16
NKX2-3Q8TAU0 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC22.33■■□□□ 1.16
NKX2-3Q8TAU0 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
NKX2-3Q8TAU0 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
NKX2-3Q8TAU0 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC22.32■■□□□ 1.16
NKX2-3Q8TAU0 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
NKX2-3Q8TAU0 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC22.32■■□□□ 1.16
NKX2-3Q8TAU0 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
NKX2-3Q8TAU0 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC22.32■■□□□ 1.16
NKX2-3Q8TAU0 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC22.32■■□□□ 1.16
NKX2-3Q8TAU0 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
NKX2-3Q8TAU0 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC22.32■■□□□ 1.16
NKX2-3Q8TAU0 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
NKX2-3Q8TAU0 CCR12P-201ENST00000446203 998 ntBASIC22.32■■□□□ 1.16
NKX2-3Q8TAU0 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC22.32■■□□□ 1.16
NKX2-3Q8TAU0 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC22.32■■□□□ 1.16
NKX2-3Q8TAU0 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC22.32■■□□□ 1.16
NKX2-3Q8TAU0 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
NKX2-3Q8TAU0 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
NKX2-3Q8TAU0 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC22.32■■□□□ 1.16
NKX2-3Q8TAU0 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
NKX2-3Q8TAU0 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
NKX2-3Q8TAU0 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
NKX2-3Q8TAU0 AC006333.2-201ENST00000607957 2099 ntBASIC22.32■■□□□ 1.16
NKX2-3Q8TAU0 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
NKX2-3Q8TAU0 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
NKX2-3Q8TAU0 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC22.31■■□□□ 1.16
NKX2-3Q8TAU0 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
NKX2-3Q8TAU0 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
NKX2-3Q8TAU0 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
NKX2-3Q8TAU0 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
NKX2-3Q8TAU0 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC22.31■■□□□ 1.16
NKX2-3Q8TAU0 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
NKX2-3Q8TAU0 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
NKX2-3Q8TAU0 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC22.31■■□□□ 1.16
NKX2-3Q8TAU0 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
NKX2-3Q8TAU0 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC22.31■■□□□ 1.16
NKX2-3Q8TAU0 BUB3-202ENST00000368859 667 ntTSL 3 BASIC22.31■■□□□ 1.16
NKX2-3Q8TAU0 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC22.31■■□□□ 1.16
NKX2-3Q8TAU0 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC22.31■■□□□ 1.16
NKX2-3Q8TAU0 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
NKX2-3Q8TAU0 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC22.31■■□□□ 1.16
NKX2-3Q8TAU0 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC22.31■■□□□ 1.16
NKX2-3Q8TAU0 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC22.31■■□□□ 1.16
NKX2-3Q8TAU0 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC22.31■■□□□ 1.16
NKX2-3Q8TAU0 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC22.31■■□□□ 1.16
NKX2-3Q8TAU0 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC22.31■■□□□ 1.16
NKX2-3Q8TAU0 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
NKX2-3Q8TAU0 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
NKX2-3Q8TAU0 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC22.31■■□□□ 1.16
NKX2-3Q8TAU0 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC22.31■■□□□ 1.16
NKX2-3Q8TAU0 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
NKX2-3Q8TAU0 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC22.31■■□□□ 1.16
NKX2-3Q8TAU0 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
NKX2-3Q8TAU0 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
NKX2-3Q8TAU0 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
NKX2-3Q8TAU0 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
NKX2-3Q8TAU0 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
NKX2-3Q8TAU0 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
NKX2-3Q8TAU0 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC22.3■■□□□ 1.16
NKX2-3Q8TAU0 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
NKX2-3Q8TAU0 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
NKX2-3Q8TAU0 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
NKX2-3Q8TAU0 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
NKX2-3Q8TAU0 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC22.3■■□□□ 1.16
NKX2-3Q8TAU0 SLC25A1P2-201ENST00000430693 912 ntBASIC22.3■■□□□ 1.16
NKX2-3Q8TAU0 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC22.3■■□□□ 1.16
NKX2-3Q8TAU0 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC22.3■■□□□ 1.16
NKX2-3Q8TAU0 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC22.3■■□□□ 1.16
NKX2-3Q8TAU0 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC22.3■■□□□ 1.16
NKX2-3Q8TAU0 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC22.3■■□□□ 1.16
NKX2-3Q8TAU0 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
NKX2-3Q8TAU0 KRT8P45-201ENST00000414328 1447 ntBASIC22.3■■□□□ 1.16
NKX2-3Q8TAU0 KRT8P3-201ENST00000519669 1449 ntBASIC22.3■■□□□ 1.16
NKX2-3Q8TAU0 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC22.3■■□□□ 1.16
NKX2-3Q8TAU0 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
NKX2-3Q8TAU0 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
NKX2-3Q8TAU0 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC22.3■■□□□ 1.16
NKX2-3Q8TAU0 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC22.3■■□□□ 1.16
NKX2-3Q8TAU0 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC22.29■■□□□ 1.16
NKX2-3Q8TAU0 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC22.29■■□□□ 1.16
NKX2-3Q8TAU0 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
NKX2-3Q8TAU0 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
NKX2-3Q8TAU0 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC22.29■■□□□ 1.16
NKX2-3Q8TAU0 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC22.29■■□□□ 1.16
NKX2-3Q8TAU0 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC22.29■■□□□ 1.16
NKX2-3Q8TAU0 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
NKX2-3Q8TAU0 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC22.29■■□□□ 1.16
NKX2-3Q8TAU0 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
NKX2-3Q8TAU0 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC22.29■■□□□ 1.16
NKX2-3Q8TAU0 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
NKX2-3Q8TAU0 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC22.29■■□□□ 1.16
NKX2-3Q8TAU0 CA15P1-201ENST00000481698 905 ntBASIC22.29■■□□□ 1.16
NKX2-3Q8TAU0 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
NKX2-3Q8TAU0 AC010653.2-201ENST00000623505 997 ntBASIC22.29■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms