Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC17.47■□□□□ 0.39
ZNF540Q8NDQ6 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC17.47■□□□□ 0.39
ZNF540Q8NDQ6 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC17.47■□□□□ 0.39
ZNF540Q8NDQ6 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
ZNF540Q8NDQ6 ITM2C-210ENST00000620962 501 ntBASIC17.47■□□□□ 0.39
ZNF540Q8NDQ6 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
ZNF540Q8NDQ6 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
ZNF540Q8NDQ6 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC17.47■□□□□ 0.39
ZNF540Q8NDQ6 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
ZNF540Q8NDQ6 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
ZNF540Q8NDQ6 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
ZNF540Q8NDQ6 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
ZNF540Q8NDQ6 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
ZNF540Q8NDQ6 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
ZNF540Q8NDQ6 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
ZNF540Q8NDQ6 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
ZNF540Q8NDQ6 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC17.46■□□□□ 0.39
ZNF540Q8NDQ6 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
ZNF540Q8NDQ6 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
ZNF540Q8NDQ6 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
ZNF540Q8NDQ6 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC17.46■□□□□ 0.39
ZNF540Q8NDQ6 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
ZNF540Q8NDQ6 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
ZNF540Q8NDQ6 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
ZNF540Q8NDQ6 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
ZNF540Q8NDQ6 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
ZNF540Q8NDQ6 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
ZNF540Q8NDQ6 AC091874.3-201ENST00000512672 1195 ntBASIC17.46■□□□□ 0.39
ZNF540Q8NDQ6 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
ZNF540Q8NDQ6 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC17.46■□□□□ 0.39
ZNF540Q8NDQ6 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
ZNF540Q8NDQ6 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC17.46■□□□□ 0.39
ZNF540Q8NDQ6 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC17.46■□□□□ 0.39
ZNF540Q8NDQ6 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
ZNF540Q8NDQ6 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
ZNF540Q8NDQ6 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
ZNF540Q8NDQ6 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
ZNF540Q8NDQ6 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC17.46■□□□□ 0.38
ZNF540Q8NDQ6 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
ZNF540Q8NDQ6 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
ZNF540Q8NDQ6 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
ZNF540Q8NDQ6 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC17.45■□□□□ 0.38
ZNF540Q8NDQ6 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC17.45■□□□□ 0.38
ZNF540Q8NDQ6 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
ZNF540Q8NDQ6 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
ZNF540Q8NDQ6 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
ZNF540Q8NDQ6 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
ZNF540Q8NDQ6 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
ZNF540Q8NDQ6 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
ZNF540Q8NDQ6 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
ZNF540Q8NDQ6 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC17.45■□□□□ 0.38
ZNF540Q8NDQ6 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
ZNF540Q8NDQ6 MYC-209ENST00000641252 345 ntBASIC17.45■□□□□ 0.38
ZNF540Q8NDQ6 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC17.45■□□□□ 0.38
ZNF540Q8NDQ6 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
ZNF540Q8NDQ6 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
ZNF540Q8NDQ6 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
ZNF540Q8NDQ6 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC17.45■□□□□ 0.38
ZNF540Q8NDQ6 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
ZNF540Q8NDQ6 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
ZNF540Q8NDQ6 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC17.45■□□□□ 0.38
ZNF540Q8NDQ6 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
ZNF540Q8NDQ6 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
ZNF540Q8NDQ6 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC17.44■□□□□ 0.38
ZNF540Q8NDQ6 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
ZNF540Q8NDQ6 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ZNF540Q8NDQ6 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
ZNF540Q8NDQ6 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
ZNF540Q8NDQ6 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
ZNF540Q8NDQ6 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ZNF540Q8NDQ6 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ZNF540Q8NDQ6 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
ZNF540Q8NDQ6 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ZNF540Q8NDQ6 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ZNF540Q8NDQ6 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC17.44■□□□□ 0.38
ZNF540Q8NDQ6 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
ZNF540Q8NDQ6 DUSP5P2-201ENST00000426873 1033 ntBASIC17.44■□□□□ 0.38
ZNF540Q8NDQ6 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC17.44■□□□□ 0.38
ZNF540Q8NDQ6 BET1L-207ENST00000529614 560 ntTSL 5 BASIC17.44■□□□□ 0.38
ZNF540Q8NDQ6 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC17.44■□□□□ 0.38
ZNF540Q8NDQ6 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
ZNF540Q8NDQ6 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ZNF540Q8NDQ6 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
ZNF540Q8NDQ6 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
ZNF540Q8NDQ6 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ZNF540Q8NDQ6 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ZNF540Q8NDQ6 ANO7L1-203ENST00000602586 1720 ntBASIC17.44■□□□□ 0.38
ZNF540Q8NDQ6 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ZNF540Q8NDQ6 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
ZNF540Q8NDQ6 AC018553.1-201ENST00000616682 1458 ntBASIC17.44■□□□□ 0.38
ZNF540Q8NDQ6 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
ZNF540Q8NDQ6 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
ZNF540Q8NDQ6 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC17.43■□□□□ 0.38
ZNF540Q8NDQ6 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
ZNF540Q8NDQ6 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
ZNF540Q8NDQ6 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
ZNF540Q8NDQ6 AC012313.1-201ENST00000593393 3059 ntBASIC17.43■□□□□ 0.38
ZNF540Q8NDQ6 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
ZNF540Q8NDQ6 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
ZNF540Q8NDQ6 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms