Protein–RNA interactions for Protein: Q8N998

CCDC89, Coiled-coil domain-containing protein 89, humanhuman

Predictions only

Length 374 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC89Q8N998 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
CCDC89Q8N998 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC89Q8N998 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC89Q8N998 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC89Q8N998 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
CCDC89Q8N998 KRT17P3-201ENST00000420566 1262 ntBASIC19.58■□□□□ 0.72
CCDC89Q8N998 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC19.58■□□□□ 0.72
CCDC89Q8N998 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC89Q8N998 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC19.58■□□□□ 0.72
CCDC89Q8N998 RNA5SP413-201ENST00000516373 109 ntBASIC19.58■□□□□ 0.72
CCDC89Q8N998 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC89Q8N998 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC89Q8N998 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC19.58■□□□□ 0.72
CCDC89Q8N998 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
CCDC89Q8N998 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC19.58■□□□□ 0.72
CCDC89Q8N998 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC19.58■□□□□ 0.72
CCDC89Q8N998 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC89Q8N998 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC19.58■□□□□ 0.72
CCDC89Q8N998 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC89Q8N998 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC89Q8N998 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC89Q8N998 AL354751.1-201ENST00000412768 1863 ntBASIC19.58■□□□□ 0.72
CCDC89Q8N998 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC19.58■□□□□ 0.72
CCDC89Q8N998 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC89Q8N998 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC89Q8N998 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC89Q8N998 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC19.57■□□□□ 0.72
CCDC89Q8N998 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC89Q8N998 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC89Q8N998 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC19.57■□□□□ 0.72
CCDC89Q8N998 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC19.57■□□□□ 0.72
CCDC89Q8N998 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC89Q8N998 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC19.57■□□□□ 0.72
CCDC89Q8N998 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC89Q8N998 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC89Q8N998 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC19.57■□□□□ 0.72
CCDC89Q8N998 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
CCDC89Q8N998 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC19.57■□□□□ 0.72
CCDC89Q8N998 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
CCDC89Q8N998 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
CCDC89Q8N998 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC19.57■□□□□ 0.72
CCDC89Q8N998 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC89Q8N998 HLA-L-209ENST00000420110 1011 ntBASIC19.57■□□□□ 0.72
CCDC89Q8N998 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC89Q8N998 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC19.57■□□□□ 0.72
CCDC89Q8N998 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC19.57■□□□□ 0.72
CCDC89Q8N998 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC19.57■□□□□ 0.72
CCDC89Q8N998 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC19.57■□□□□ 0.72
CCDC89Q8N998 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC19.57■□□□□ 0.72
CCDC89Q8N998 AC008403.3-201ENST00000598924 454 ntBASIC19.57■□□□□ 0.72
CCDC89Q8N998 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC19.57■□□□□ 0.72
CCDC89Q8N998 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
CCDC89Q8N998 GOLGA6L5P-202ENST00000515341 1828 ntBASIC19.57■□□□□ 0.72
CCDC89Q8N998 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC19.57■□□□□ 0.72
CCDC89Q8N998 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC89Q8N998 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC19.57■□□□□ 0.72
CCDC89Q8N998 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC19.57■□□□□ 0.72
CCDC89Q8N998 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC89Q8N998 EML3-217ENST00000531557 2509 ntTSL 5 BASIC19.57■□□□□ 0.72
CCDC89Q8N998 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC19.57■□□□□ 0.72
CCDC89Q8N998 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
CCDC89Q8N998 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC19.57■□□□□ 0.72
CCDC89Q8N998 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC19.57■□□□□ 0.72
CCDC89Q8N998 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
CCDC89Q8N998 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC89Q8N998 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC89Q8N998 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC89Q8N998 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
CCDC89Q8N998 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC89Q8N998 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC89Q8N998 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
CCDC89Q8N998 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC89Q8N998 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC89Q8N998 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC89Q8N998 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC19.56■□□□□ 0.72
CCDC89Q8N998 APTR-205ENST00000447009 902 ntTSL 2 BASIC19.56■□□□□ 0.72
CCDC89Q8N998 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC19.56■□□□□ 0.72
CCDC89Q8N998 KLF13-207ENST00000560473 489 ntTSL 3 BASIC19.56■□□□□ 0.72
CCDC89Q8N998 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC89Q8N998 AC069544.1-201ENST00000609399 999 ntBASIC19.56■□□□□ 0.72
CCDC89Q8N998 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC89Q8N998 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC89Q8N998 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC89Q8N998 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC89Q8N998 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC89Q8N998 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC89Q8N998 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC89Q8N998 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC19.56■□□□□ 0.72
CCDC89Q8N998 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC89Q8N998 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC89Q8N998 AC026471.1-201ENST00000564629 3026 ntBASIC19.56■□□□□ 0.72
CCDC89Q8N998 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
CCDC89Q8N998 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC89Q8N998 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC89Q8N998 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC19.55■□□□□ 0.72
CCDC89Q8N998 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC89Q8N998 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC19.55■□□□□ 0.72
CCDC89Q8N998 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC89Q8N998 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC89Q8N998 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms