Protein–RNA interactions for Protein: Q5T4S7

UBR4, E3 ubiquitin-protein ligase UBR4, humanhuman

Predictions only

Length 5,183 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4Q5T4S7 AC064836.3-201ENST00000607928 673 ntBASIC10.3□□□□□ -0.76
UBR4Q5T4S7 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC10.3□□□□□ -0.76
UBR4Q5T4S7 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC10.3□□□□□ -0.76
UBR4Q5T4S7 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
UBR4Q5T4S7 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC10.3□□□□□ -0.76
UBR4Q5T4S7 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC10.3□□□□□ -0.76
UBR4Q5T4S7 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
UBR4Q5T4S7 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC10.3□□□□□ -0.76
UBR4Q5T4S7 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC10.3□□□□□ -0.76
UBR4Q5T4S7 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC10.3□□□□□ -0.76
UBR4Q5T4S7 IGHV3OR16-16-201ENST00000563644 343 ntBASIC10.3□□□□□ -0.76
UBR4Q5T4S7 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC10.3□□□□□ -0.76
UBR4Q5T4S7 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
UBR4Q5T4S7 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
UBR4Q5T4S7 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
UBR4Q5T4S7 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
UBR4Q5T4S7 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC10.3□□□□□ -0.76
UBR4Q5T4S7 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
UBR4Q5T4S7 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
UBR4Q5T4S7 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
UBR4Q5T4S7 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC10.3□□□□□ -0.76
UBR4Q5T4S7 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC10.3□□□□□ -0.76
UBR4Q5T4S7 AQP8-202ENST00000566125 1276 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
UBR4Q5T4S7 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC10.3□□□□□ -0.76
UBR4Q5T4S7 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
UBR4Q5T4S7 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
UBR4Q5T4S7 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC10.3□□□□□ -0.76
UBR4Q5T4S7 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
UBR4Q5T4S7 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC10.3□□□□□ -0.76
UBR4Q5T4S7 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC10.3□□□□□ -0.76
UBR4Q5T4S7 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC10.3□□□□□ -0.76
UBR4Q5T4S7 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC10.3□□□□□ -0.76
UBR4Q5T4S7 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC10.3□□□□□ -0.76
UBR4Q5T4S7 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
UBR4Q5T4S7 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC10.3□□□□□ -0.76
UBR4Q5T4S7 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
UBR4Q5T4S7 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC10.3□□□□□ -0.76
UBR4Q5T4S7 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
UBR4Q5T4S7 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC10.29□□□□□ -0.76
UBR4Q5T4S7 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
UBR4Q5T4S7 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
UBR4Q5T4S7 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC10.29□□□□□ -0.76
UBR4Q5T4S7 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC10.29□□□□□ -0.76
UBR4Q5T4S7 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC10.29□□□□□ -0.76
UBR4Q5T4S7 AC025048.6-201ENST00000634326 1161 ntBASIC10.29□□□□□ -0.76
UBR4Q5T4S7 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC10.29□□□□□ -0.76
UBR4Q5T4S7 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
UBR4Q5T4S7 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
UBR4Q5T4S7 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC10.29□□□□□ -0.76
UBR4Q5T4S7 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
UBR4Q5T4S7 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
UBR4Q5T4S7 THAP5-204ENST00000438865 868 ntTSL 2 BASIC10.29□□□□□ -0.76
UBR4Q5T4S7 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC10.29□□□□□ -0.76
UBR4Q5T4S7 CR383656.12-201ENST00000549567 513 ntBASIC10.29□□□□□ -0.76
UBR4Q5T4S7 COX5A-204ENST00000567270 579 ntTSL 3 BASIC10.29□□□□□ -0.76
UBR4Q5T4S7 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC10.29□□□□□ -0.76
UBR4Q5T4S7 KRT8P3-201ENST00000519669 1449 ntBASIC10.29□□□□□ -0.76
UBR4Q5T4S7 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
UBR4Q5T4S7 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC10.29□□□□□ -0.76
UBR4Q5T4S7 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC10.29□□□□□ -0.76
UBR4Q5T4S7 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
UBR4Q5T4S7 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
UBR4Q5T4S7 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
UBR4Q5T4S7 BCYRN1-201ENST00000418539 200 ntBASIC10.29□□□□□ -0.76
UBR4Q5T4S7 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC10.29□□□□□ -0.76
UBR4Q5T4S7 RPL28-206ENST00000558752 671 ntTSL 3 BASIC10.29□□□□□ -0.76
UBR4Q5T4S7 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC10.29□□□□□ -0.76
UBR4Q5T4S7 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC10.29□□□□□ -0.76
UBR4Q5T4S7 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
UBR4Q5T4S7 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC10.29□□□□□ -0.76
UBR4Q5T4S7 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
UBR4Q5T4S7 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC10.29□□□□□ -0.76
UBR4Q5T4S7 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
UBR4Q5T4S7 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
UBR4Q5T4S7 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
UBR4Q5T4S7 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
UBR4Q5T4S7 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC10.29□□□□□ -0.76
UBR4Q5T4S7 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
UBR4Q5T4S7 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC10.29□□□□□ -0.76
UBR4Q5T4S7 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC10.29□□□□□ -0.76
UBR4Q5T4S7 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
UBR4Q5T4S7 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC10.29□□□□□ -0.76
UBR4Q5T4S7 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC10.28□□□□□ -0.76
UBR4Q5T4S7 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC10.28□□□□□ -0.76
UBR4Q5T4S7 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC10.28□□□□□ -0.76
UBR4Q5T4S7 IGHV3-71-201ENST00000523324 359 ntBASIC10.28□□□□□ -0.76
UBR4Q5T4S7 OR7E14P-202ENST00000530490 1290 ntBASIC10.28□□□□□ -0.76
UBR4Q5T4S7 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC10.28□□□□□ -0.76
UBR4Q5T4S7 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC10.28□□□□□ -0.76
UBR4Q5T4S7 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC10.28□□□□□ -0.76
UBR4Q5T4S7 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC10.28□□□□□ -0.76
UBR4Q5T4S7 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
UBR4Q5T4S7 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
UBR4Q5T4S7 FUOM-202ENST00000368551 628 ntTSL 3 BASIC10.28□□□□□ -0.76
UBR4Q5T4S7 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC10.28□□□□□ -0.76
UBR4Q5T4S7 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC10.28□□□□□ -0.76
UBR4Q5T4S7 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC10.28□□□□□ -0.76
UBR4Q5T4S7 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
UBR4Q5T4S7 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
UBR4Q5T4S7 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
Retrieved 100 of 98,524 protein–RNA pairs in 16.9 ms