Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CHD9Q3L8U1 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
CHD9Q3L8U1 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
CHD9Q3L8U1 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
CHD9Q3L8U1 CSF3-203ENST00000394148 622 ntTSL 3 BASIC19.99■□□□□ 0.79
CHD9Q3L8U1 HNRNPDP1-201ENST00000439535 754 ntBASIC19.99■□□□□ 0.79
CHD9Q3L8U1 AC112907.3-201ENST00000577781 2400 ntBASIC19.99■□□□□ 0.79
CHD9Q3L8U1 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CHD9Q3L8U1 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
CHD9Q3L8U1 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CHD9Q3L8U1 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC19.98■□□□□ 0.79
CHD9Q3L8U1 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CHD9Q3L8U1 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CHD9Q3L8U1 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CHD9Q3L8U1 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CHD9Q3L8U1 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC19.98■□□□□ 0.79
CHD9Q3L8U1 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
CHD9Q3L8U1 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC19.98■□□□□ 0.79
CHD9Q3L8U1 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC19.98■□□□□ 0.79
CHD9Q3L8U1 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC19.98■□□□□ 0.79
CHD9Q3L8U1 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC19.98■□□□□ 0.79
CHD9Q3L8U1 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC19.98■□□□□ 0.79
CHD9Q3L8U1 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CHD9Q3L8U1 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
CHD9Q3L8U1 AF186996.4-201ENST00000467186 377 ntBASIC19.98■□□□□ 0.79
CHD9Q3L8U1 RN7SL606P-201ENST00000472779 293 ntBASIC19.98■□□□□ 0.79
CHD9Q3L8U1 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC19.98■□□□□ 0.79
CHD9Q3L8U1 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
CHD9Q3L8U1 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC19.98■□□□□ 0.79
CHD9Q3L8U1 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
CHD9Q3L8U1 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC19.98■□□□□ 0.79
CHD9Q3L8U1 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC19.98■□□□□ 0.79
CHD9Q3L8U1 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
CHD9Q3L8U1 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
CHD9Q3L8U1 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
CHD9Q3L8U1 AC098831.1-202ENST00000438821 336 ntBASIC19.97■□□□□ 0.79
CHD9Q3L8U1 URGCP-206ENST00000446958 365 ntTSL 2 BASIC19.97■□□□□ 0.79
CHD9Q3L8U1 CFL1-212ENST00000531413 636 ntTSL 3 BASIC19.97■□□□□ 0.79
CHD9Q3L8U1 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC19.97■□□□□ 0.79
CHD9Q3L8U1 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CHD9Q3L8U1 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CHD9Q3L8U1 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CHD9Q3L8U1 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC19.97■□□□□ 0.79
CHD9Q3L8U1 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
CHD9Q3L8U1 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
CHD9Q3L8U1 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CHD9Q3L8U1 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CHD9Q3L8U1 CCS-201ENST00000310190 942 ntTSL 5 BASIC19.97■□□□□ 0.79
CHD9Q3L8U1 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CHD9Q3L8U1 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC19.97■□□□□ 0.79
CHD9Q3L8U1 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CHD9Q3L8U1 IGHGP-201ENST00000390555 1178 ntBASIC19.97■□□□□ 0.79
CHD9Q3L8U1 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC19.97■□□□□ 0.79
CHD9Q3L8U1 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CHD9Q3L8U1 AC010327.4-202ENST00000591484 748 ntBASIC19.97■□□□□ 0.79
CHD9Q3L8U1 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC19.97■□□□□ 0.79
CHD9Q3L8U1 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CHD9Q3L8U1 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CHD9Q3L8U1 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CHD9Q3L8U1 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CHD9Q3L8U1 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC19.97■□□□□ 0.79
CHD9Q3L8U1 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CHD9Q3L8U1 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC19.97■□□□□ 0.79
CHD9Q3L8U1 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
CHD9Q3L8U1 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
CHD9Q3L8U1 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC19.97■□□□□ 0.79
CHD9Q3L8U1 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CHD9Q3L8U1 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC19.97■□□□□ 0.79
CHD9Q3L8U1 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CHD9Q3L8U1 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
CHD9Q3L8U1 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CHD9Q3L8U1 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CHD9Q3L8U1 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
CHD9Q3L8U1 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CHD9Q3L8U1 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC19.96■□□□□ 0.79
CHD9Q3L8U1 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CHD9Q3L8U1 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC19.96■□□□□ 0.79
CHD9Q3L8U1 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
CHD9Q3L8U1 ZNF815P-204ENST00000434898 1737 ntBASIC19.96■□□□□ 0.79
CHD9Q3L8U1 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CHD9Q3L8U1 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CHD9Q3L8U1 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC19.96■□□□□ 0.79
CHD9Q3L8U1 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC19.96■□□□□ 0.79
CHD9Q3L8U1 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CHD9Q3L8U1 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CHD9Q3L8U1 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CHD9Q3L8U1 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC19.95■□□□□ 0.78
CHD9Q3L8U1 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CHD9Q3L8U1 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CHD9Q3L8U1 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CHD9Q3L8U1 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC19.95■□□□□ 0.78
CHD9Q3L8U1 AC027601.4-201ENST00000611259 610 ntBASIC19.95■□□□□ 0.78
CHD9Q3L8U1 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CHD9Q3L8U1 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CHD9Q3L8U1 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CHD9Q3L8U1 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CHD9Q3L8U1 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC19.95■□□□□ 0.78
CHD9Q3L8U1 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC19.95■□□□□ 0.78
CHD9Q3L8U1 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CHD9Q3L8U1 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms