Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC18.11■□□□□ 0.49
COL28A1Q2UY09 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC18.11■□□□□ 0.49
COL28A1Q2UY09 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
COL28A1Q2UY09 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
COL28A1Q2UY09 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL28A1Q2UY09 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL28A1Q2UY09 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC18.1■□□□□ 0.49
COL28A1Q2UY09 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL28A1Q2UY09 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL28A1Q2UY09 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL28A1Q2UY09 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL28A1Q2UY09 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL28A1Q2UY09 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL28A1Q2UY09 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL28A1Q2UY09 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL28A1Q2UY09 PHGDH-210ENST00000641115 1638 ntBASIC18.1■□□□□ 0.49
COL28A1Q2UY09 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC18.1■□□□□ 0.49
COL28A1Q2UY09 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL28A1Q2UY09 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
COL28A1Q2UY09 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL28A1Q2UY09 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
COL28A1Q2UY09 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL28A1Q2UY09 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL28A1Q2UY09 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC18.1■□□□□ 0.49
COL28A1Q2UY09 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC18.1■□□□□ 0.49
COL28A1Q2UY09 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC18.1■□□□□ 0.49
COL28A1Q2UY09 AP003041.3-201ENST00000527151 707 ntBASIC18.1■□□□□ 0.49
COL28A1Q2UY09 GCSHP2-201ENST00000560971 527 ntBASIC18.1■□□□□ 0.49
COL28A1Q2UY09 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC18.1■□□□□ 0.49
COL28A1Q2UY09 SLC25A6P4-201ENST00000586535 553 ntBASIC18.1■□□□□ 0.49
COL28A1Q2UY09 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL28A1Q2UY09 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC18.1■□□□□ 0.49
COL28A1Q2UY09 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
COL28A1Q2UY09 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL28A1Q2UY09 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL28A1Q2UY09 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC18.1■□□□□ 0.49
COL28A1Q2UY09 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL28A1Q2UY09 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
COL28A1Q2UY09 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL28A1Q2UY09 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.09■□□□□ 0.49
COL28A1Q2UY09 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL28A1Q2UY09 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL28A1Q2UY09 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC18.09■□□□□ 0.49
COL28A1Q2UY09 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL28A1Q2UY09 GOLGA2P11-201ENST00000562660 1621 ntBASIC18.09■□□□□ 0.49
COL28A1Q2UY09 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
COL28A1Q2UY09 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL28A1Q2UY09 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL28A1Q2UY09 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL28A1Q2UY09 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL28A1Q2UY09 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
COL28A1Q2UY09 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC18.09■□□□□ 0.49
COL28A1Q2UY09 SPDYE15P-201ENST00000424157 909 ntBASIC18.09■□□□□ 0.49
COL28A1Q2UY09 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC18.09■□□□□ 0.49
COL28A1Q2UY09 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC18.09■□□□□ 0.49
COL28A1Q2UY09 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC18.09■□□□□ 0.49
COL28A1Q2UY09 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
COL28A1Q2UY09 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC18.09■□□□□ 0.49
COL28A1Q2UY09 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL28A1Q2UY09 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL28A1Q2UY09 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC18.09■□□□□ 0.49
COL28A1Q2UY09 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL28A1Q2UY09 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
COL28A1Q2UY09 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC18.08■□□□□ 0.49
COL28A1Q2UY09 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC18.08■□□□□ 0.49
COL28A1Q2UY09 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL28A1Q2UY09 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC18.08■□□□□ 0.49
COL28A1Q2UY09 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
COL28A1Q2UY09 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
COL28A1Q2UY09 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL28A1Q2UY09 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC18.08■□□□□ 0.48
COL28A1Q2UY09 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC18.08■□□□□ 0.48
COL28A1Q2UY09 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC18.08■□□□□ 0.48
COL28A1Q2UY09 BX276092.5-203ENST00000456199 560 ntBASIC18.08■□□□□ 0.48
COL28A1Q2UY09 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC18.08■□□□□ 0.48
COL28A1Q2UY09 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC18.08■□□□□ 0.48
COL28A1Q2UY09 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC18.08■□□□□ 0.48
COL28A1Q2UY09 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC18.08■□□□□ 0.48
COL28A1Q2UY09 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
COL28A1Q2UY09 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC18.08■□□□□ 0.48
COL28A1Q2UY09 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
COL28A1Q2UY09 HLA-A-209ENST00000638375 975 ntBASIC18.08■□□□□ 0.48
COL28A1Q2UY09 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
COL28A1Q2UY09 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
COL28A1Q2UY09 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL28A1Q2UY09 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL28A1Q2UY09 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC18.08■□□□□ 0.48
COL28A1Q2UY09 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
COL28A1Q2UY09 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
COL28A1Q2UY09 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
COL28A1Q2UY09 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC18.07■□□□□ 0.48
COL28A1Q2UY09 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
COL28A1Q2UY09 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL28A1Q2UY09 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL28A1Q2UY09 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
COL28A1Q2UY09 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL28A1Q2UY09 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL28A1Q2UY09 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL28A1Q2UY09 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
COL28A1Q2UY09 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms