Protein–RNA interactions for Protein: Q2NKJ3

CTC1, CST complex subunit CTC1, humanhuman

Predictions only

Length 1,217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTC1Q2NKJ3 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CTC1Q2NKJ3 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC20.16■□□□□ 0.82
CTC1Q2NKJ3 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC20.16■□□□□ 0.82
CTC1Q2NKJ3 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC20.16■□□□□ 0.82
CTC1Q2NKJ3 AC104692.2-201ENST00000603054 253 ntBASIC20.16■□□□□ 0.82
CTC1Q2NKJ3 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
CTC1Q2NKJ3 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CTC1Q2NKJ3 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
CTC1Q2NKJ3 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CTC1Q2NKJ3 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CTC1Q2NKJ3 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CTC1Q2NKJ3 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CTC1Q2NKJ3 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CTC1Q2NKJ3 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC20.16■□□□□ 0.82
CTC1Q2NKJ3 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CTC1Q2NKJ3 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CTC1Q2NKJ3 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
CTC1Q2NKJ3 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
CTC1Q2NKJ3 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CTC1Q2NKJ3 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC20.15■□□□□ 0.82
CTC1Q2NKJ3 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC20.15■□□□□ 0.82
CTC1Q2NKJ3 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC20.15■□□□□ 0.82
CTC1Q2NKJ3 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC20.15■□□□□ 0.82
CTC1Q2NKJ3 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC20.15■□□□□ 0.82
CTC1Q2NKJ3 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CTC1Q2NKJ3 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC20.15■□□□□ 0.82
CTC1Q2NKJ3 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
CTC1Q2NKJ3 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC20.15■□□□□ 0.82
CTC1Q2NKJ3 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CTC1Q2NKJ3 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CTC1Q2NKJ3 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC20.15■□□□□ 0.82
CTC1Q2NKJ3 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
CTC1Q2NKJ3 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
CTC1Q2NKJ3 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC20.14■□□□□ 0.81
CTC1Q2NKJ3 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
CTC1Q2NKJ3 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CTC1Q2NKJ3 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC20.14■□□□□ 0.81
CTC1Q2NKJ3 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CTC1Q2NKJ3 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CTC1Q2NKJ3 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
CTC1Q2NKJ3 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC20.14■□□□□ 0.81
CTC1Q2NKJ3 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC20.14■□□□□ 0.81
CTC1Q2NKJ3 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CTC1Q2NKJ3 CALM1-205ENST00000553542 877 ntTSL 5 BASIC20.14■□□□□ 0.81
CTC1Q2NKJ3 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC20.14■□□□□ 0.81
CTC1Q2NKJ3 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
CTC1Q2NKJ3 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CTC1Q2NKJ3 AP000974.1-201ENST00000623909 2387 ntBASIC20.14■□□□□ 0.81
CTC1Q2NKJ3 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CTC1Q2NKJ3 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CTC1Q2NKJ3 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CTC1Q2NKJ3 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
CTC1Q2NKJ3 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CTC1Q2NKJ3 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CTC1Q2NKJ3 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC20.13■□□□□ 0.81
CTC1Q2NKJ3 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CTC1Q2NKJ3 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CTC1Q2NKJ3 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CTC1Q2NKJ3 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CTC1Q2NKJ3 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CTC1Q2NKJ3 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CTC1Q2NKJ3 BUB3-202ENST00000368859 667 ntTSL 3 BASIC20.13■□□□□ 0.81
CTC1Q2NKJ3 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CTC1Q2NKJ3 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CTC1Q2NKJ3 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC20.13■□□□□ 0.81
CTC1Q2NKJ3 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC20.13■□□□□ 0.81
CTC1Q2NKJ3 AC034232.1-201ENST00000506026 1064 ntBASIC20.13■□□□□ 0.81
CTC1Q2NKJ3 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC20.13■□□□□ 0.81
CTC1Q2NKJ3 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
CTC1Q2NKJ3 IFNL4P1-201ENST00000607083 540 ntBASIC20.13■□□□□ 0.81
CTC1Q2NKJ3 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC20.13■□□□□ 0.81
CTC1Q2NKJ3 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC20.13■□□□□ 0.81
CTC1Q2NKJ3 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC20.13■□□□□ 0.81
CTC1Q2NKJ3 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CTC1Q2NKJ3 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
CTC1Q2NKJ3 AP001271.2-201ENST00000624018 1556 ntBASIC20.12■□□□□ 0.81
CTC1Q2NKJ3 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC20.12■□□□□ 0.81
CTC1Q2NKJ3 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CTC1Q2NKJ3 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CTC1Q2NKJ3 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
CTC1Q2NKJ3 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC20.12■□□□□ 0.81
CTC1Q2NKJ3 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC20.12■□□□□ 0.81
CTC1Q2NKJ3 AL022342.1-201ENST00000400363 863 ntBASIC20.12■□□□□ 0.81
CTC1Q2NKJ3 TSPY19P-201ENST00000418461 509 ntBASIC20.12■□□□□ 0.81
CTC1Q2NKJ3 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC20.12■□□□□ 0.81
CTC1Q2NKJ3 TSPY18P-201ENST00000441642 509 ntBASIC20.12■□□□□ 0.81
CTC1Q2NKJ3 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC20.12■□□□□ 0.81
CTC1Q2NKJ3 EMBP1-201ENST00000458200 901 ntBASIC20.12■□□□□ 0.81
CTC1Q2NKJ3 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CTC1Q2NKJ3 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC20.12■□□□□ 0.81
CTC1Q2NKJ3 AP002414.4-201ENST00000589764 1148 ntBASIC20.12■□□□□ 0.81
CTC1Q2NKJ3 GXYLT1P4-201ENST00000613576 1192 ntBASIC20.12■□□□□ 0.81
CTC1Q2NKJ3 AL031008.1-201ENST00000619963 541 ntBASIC20.12■□□□□ 0.81
CTC1Q2NKJ3 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC20.12■□□□□ 0.81
CTC1Q2NKJ3 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
CTC1Q2NKJ3 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CTC1Q2NKJ3 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
CTC1Q2NKJ3 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC20.12■□□□□ 0.81
CTC1Q2NKJ3 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC20.12■□□□□ 0.81
CTC1Q2NKJ3 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms