Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC16.86■□□□□ 0.29
CLRN1P58418 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
CLRN1P58418 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CLRN1P58418 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CLRN1P58418 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
CLRN1P58418 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC16.86■□□□□ 0.29
CLRN1P58418 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC16.86■□□□□ 0.29
CLRN1P58418 RPS2P55-201ENST00000397318 883 ntBASIC16.86■□□□□ 0.29
CLRN1P58418 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CLRN1P58418 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CLRN1P58418 AC107956.1-201ENST00000494359 873 ntBASIC16.86■□□□□ 0.29
CLRN1P58418 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
CLRN1P58418 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CLRN1P58418 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CLRN1P58418 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC16.86■□□□□ 0.29
CLRN1P58418 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
CLRN1P58418 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CLRN1P58418 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
CLRN1P58418 MME-217ENST00000616757 1315 ntTSL 5 BASIC16.86■□□□□ 0.29
CLRN1P58418 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
CLRN1P58418 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CLRN1P58418 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CLRN1P58418 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC16.86■□□□□ 0.29
CLRN1P58418 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CLRN1P58418 FSCN1P1-201ENST00000568912 1481 ntBASIC16.86■□□□□ 0.29
CLRN1P58418 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CLRN1P58418 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
CLRN1P58418 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CLRN1P58418 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CLRN1P58418 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC16.85■□□□□ 0.29
CLRN1P58418 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
CLRN1P58418 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC16.85■□□□□ 0.29
CLRN1P58418 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
CLRN1P58418 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CLRN1P58418 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CLRN1P58418 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CLRN1P58418 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CLRN1P58418 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CLRN1P58418 BAALC-201ENST00000297574 801 ntTSL 3 BASIC16.85■□□□□ 0.29
CLRN1P58418 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
CLRN1P58418 AC012618.2-201ENST00000428058 849 ntBASIC16.85■□□□□ 0.29
CLRN1P58418 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC16.85■□□□□ 0.29
CLRN1P58418 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CLRN1P58418 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC16.85■□□□□ 0.29
CLRN1P58418 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC16.85■□□□□ 0.29
CLRN1P58418 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC16.85■□□□□ 0.29
CLRN1P58418 TMEM191A-211ENST00000637163 1067 ntBASIC16.85■□□□□ 0.29
CLRN1P58418 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
CLRN1P58418 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CLRN1P58418 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC16.85■□□□□ 0.29
CLRN1P58418 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC16.85■□□□□ 0.29
CLRN1P58418 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC16.85■□□□□ 0.29
CLRN1P58418 SRI-203ENST00000419179 1307 ntTSL 2 BASIC16.85■□□□□ 0.29
CLRN1P58418 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CLRN1P58418 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CLRN1P58418 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC16.85■□□□□ 0.29
CLRN1P58418 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CLRN1P58418 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC16.85■□□□□ 0.29
CLRN1P58418 KATNBL1P6-202ENST00000562413 1466 ntBASIC16.85■□□□□ 0.29
CLRN1P58418 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CLRN1P58418 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
CLRN1P58418 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CLRN1P58418 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CLRN1P58418 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC16.85■□□□□ 0.29
CLRN1P58418 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CLRN1P58418 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC16.85■□□□□ 0.29
CLRN1P58418 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC16.84■□□□□ 0.29
CLRN1P58418 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CLRN1P58418 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CLRN1P58418 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLRN1P58418 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC16.84■□□□□ 0.29
CLRN1P58418 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC16.84■□□□□ 0.29
CLRN1P58418 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC16.84■□□□□ 0.29
CLRN1P58418 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLRN1P58418 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLRN1P58418 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLRN1P58418 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLRN1P58418 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLRN1P58418 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CLRN1P58418 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
CLRN1P58418 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
CLRN1P58418 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLRN1P58418 B3GAT3P1-201ENST00000471720 806 ntBASIC16.84■□□□□ 0.29
CLRN1P58418 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC16.84■□□□□ 0.29
CLRN1P58418 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLRN1P58418 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
CLRN1P58418 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLRN1P58418 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLRN1P58418 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC16.84■□□□□ 0.29
CLRN1P58418 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLRN1P58418 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLRN1P58418 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLRN1P58418 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLRN1P58418 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLRN1P58418 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLRN1P58418 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC16.84■□□□□ 0.29
CLRN1P58418 CROCCP3-202ENST00000420820 1947 ntBASIC16.84■□□□□ 0.29
CLRN1P58418 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLRN1P58418 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
CLRN1P58418 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms