Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC18.28■□□□□ 0.52
FOXA1P55317 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
FOXA1P55317 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
FOXA1P55317 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC18.28■□□□□ 0.52
FOXA1P55317 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC18.28■□□□□ 0.52
FOXA1P55317 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
FOXA1P55317 NFYC-AS1-201ENST00000606277 1687 ntBASIC18.28■□□□□ 0.52
FOXA1P55317 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC18.28■□□□□ 0.52
FOXA1P55317 CD276-201ENST00000318424 2738 ntTSL 5 BASIC18.28■□□□□ 0.52
FOXA1P55317 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
FOXA1P55317 NOC2LP1-202ENST00000452600 2235 ntBASIC18.27■□□□□ 0.52
FOXA1P55317 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC18.27■□□□□ 0.52
FOXA1P55317 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
FOXA1P55317 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
FOXA1P55317 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
FOXA1P55317 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
FOXA1P55317 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
FOXA1P55317 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
FOXA1P55317 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
FOXA1P55317 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC18.27■□□□□ 0.52
FOXA1P55317 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
FOXA1P55317 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
FOXA1P55317 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
FOXA1P55317 GLRB-205ENST00000512619 728 ntTSL 3 BASIC18.27■□□□□ 0.52
FOXA1P55317 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC18.27■□□□□ 0.52
FOXA1P55317 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC18.27■□□□□ 0.52
FOXA1P55317 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
FOXA1P55317 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
FOXA1P55317 TBCB-214ENST00000629269 413 ntTSL 5 BASIC18.27■□□□□ 0.52
FOXA1P55317 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
FOXA1P55317 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
FOXA1P55317 AC073592.3-201ENST00000625118 1834 ntBASIC18.27■□□□□ 0.52
FOXA1P55317 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
FOXA1P55317 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
FOXA1P55317 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
FOXA1P55317 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
FOXA1P55317 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
FOXA1P55317 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
FOXA1P55317 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
FOXA1P55317 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
FOXA1P55317 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
FOXA1P55317 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
FOXA1P55317 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
FOXA1P55317 AC079598.2-202ENST00000546624 1451 ntBASIC18.26■□□□□ 0.51
FOXA1P55317 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
FOXA1P55317 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
FOXA1P55317 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
FOXA1P55317 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC18.26■□□□□ 0.51
FOXA1P55317 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC18.26■□□□□ 0.51
FOXA1P55317 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC18.26■□□□□ 0.51
FOXA1P55317 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
FOXA1P55317 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
FOXA1P55317 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
FOXA1P55317 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
FOXA1P55317 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
FOXA1P55317 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC18.26■□□□□ 0.51
FOXA1P55317 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
FOXA1P55317 LETM1P2-201ENST00000597330 2178 ntBASIC18.26■□□□□ 0.51
FOXA1P55317 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
FOXA1P55317 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
FOXA1P55317 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
FOXA1P55317 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC18.26■□□□□ 0.51
FOXA1P55317 AC004980.1-204ENST00000429707 299 ntBASIC18.26■□□□□ 0.51
FOXA1P55317 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
FOXA1P55317 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC18.26■□□□□ 0.51
FOXA1P55317 AL445675.2-201ENST00000620291 557 ntBASIC18.26■□□□□ 0.51
FOXA1P55317 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
FOXA1P55317 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
FOXA1P55317 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
FOXA1P55317 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
FOXA1P55317 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC18.26■□□□□ 0.51
FOXA1P55317 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
FOXA1P55317 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
FOXA1P55317 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
FOXA1P55317 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
FOXA1P55317 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC18.26■□□□□ 0.51
FOXA1P55317 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC18.26■□□□□ 0.51
FOXA1P55317 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
FOXA1P55317 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC18.26■□□□□ 0.51
FOXA1P55317 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC18.26■□□□□ 0.51
FOXA1P55317 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
FOXA1P55317 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
FOXA1P55317 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
FOXA1P55317 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC18.25■□□□□ 0.51
FOXA1P55317 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
FOXA1P55317 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
FOXA1P55317 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
FOXA1P55317 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC18.25■□□□□ 0.51
FOXA1P55317 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
FOXA1P55317 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC18.25■□□□□ 0.51
FOXA1P55317 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC18.25■□□□□ 0.51
FOXA1P55317 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
FOXA1P55317 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
FOXA1P55317 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
FOXA1P55317 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
FOXA1P55317 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC18.25■□□□□ 0.51
FOXA1P55317 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
FOXA1P55317 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
FOXA1P55317 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC18.25■□□□□ 0.51
FOXA1P55317 PTPA-216ENST00000432651 857 ntTSL 2 BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms